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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:119.9 nTPM
HPA:119.9 nTPM
GTEx:147.3 nTPM
FANTOM5:41.4 Scaled Tags Per Million
Pig:98.0 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max nTPM 119.9
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 117.5
1981 Female, age 72, midline 123.2
2194 Female, age 79, both hemispheres 122.5
2816 Male, age 47, midline 115.4
2565 Male, age 75, midline 113.3
2048 Male, age 55, midline 113.1
Cervical spinal cord, dorsal horn
nTPM: 115.3
2173 Female, age 72, unknown 134.7
2296 Male, age 66, both hemispheres 124.7
2069 Male, age 47, both hemispheres 113.8
1877 Male, age 55, unknown 111.9
2297 Male, age 75, both hemispheres 104.7
2721 Male, age 90, both hemispheres 102.2
Cervical spinal cord, ventral horn
nTPM: 119.9
2068 Male, age 55, unknown 125.3
2098 Female, age 72, unknown 120.5
2809 Male, age 90, both hemispheres 118.7
2295 Male, age 66, both hemispheres 118.5
2480 Male, age 75, both hemispheres 118.4
2820 Female, age 79, both hemispheres 118.4

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 147.3
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 147.3
Samples: 159

Max nTPM: 254.1
Min nTPM: 65.4
Std nTPM: 34.6
Median nTPM: 144.5
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 254.1
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 229.5
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 229.3
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 229.0
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 227.4
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 224.6
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 223.7
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 215.3
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 210.7
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 204.8
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 204.2
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 201.4
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 199.7
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 193.5
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 193.1
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 192.6
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 190.9
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 189.8
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 189.7
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 188.1
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 187.9
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 187.4
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 184.0
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 183.4
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 182.8
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 181.3
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 179.8
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 177.4
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 177.1
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 176.4
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 176.1
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 176.0
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 175.6
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 172.0
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 171.5
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 171.1
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 170.6
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 169.3
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 169.1
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 168.5
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 167.3
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 165.8
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 165.3
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 162.5
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 162.3
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 162.1
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 161.3
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 160.8
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 160.5
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 160.4
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 160.4
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 159.5
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 159.1
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 158.5
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 157.7
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 156.2
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 155.5
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 155.5
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 154.1
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 153.9
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 153.9
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 153.9
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 153.6
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 153.4
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 152.5
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 151.2
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 150.6
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 150.3
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 149.9
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 148.7
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 148.7
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 148.4
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 147.6
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 147.3
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 147.1
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 147.0
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 146.8
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 145.9
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 145.6
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 144.5
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 144.0
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 143.9
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 143.1
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 143.0
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 142.6
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 142.3
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 142.0
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 141.7
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 141.6
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 141.4
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 141.0
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 140.9
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 139.8
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 139.5
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 138.5
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 136.6
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 136.6
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 136.0
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 136.0
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 135.8
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 135.7
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 134.4
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 133.9
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 133.5
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 132.9
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 132.6
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 132.2
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 131.1
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 131.1
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 130.5
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 129.8
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 129.0
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 128.4
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 128.3
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 128.2
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 127.7
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 126.8
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 125.0
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 123.7
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 123.5
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 122.9
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 122.6
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 119.7
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 119.2
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 118.6
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 118.2
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 118.2
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 118.2
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 118.1
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 117.5
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 117.5
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 117.1
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 116.8
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 115.7
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 115.0
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 112.8
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 112.2
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 109.9
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 109.2
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 108.9
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 107.4
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 107.2
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 106.9
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 106.7
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 105.1
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 101.0
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 99.0
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 98.5
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 94.0
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 93.0
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 91.8
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 90.3
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 87.9
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 86.4
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 85.4
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 84.5
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 79.9
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 79.5
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 65.4
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 41.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 41.4
FF:10181-103D1 60 years, female 41.5
FF:10159-103A6 76 years, female 41.3

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 98.0
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 77.3
Samples: 4

Max nTPM: 93.7
Min nTPM: 67.9
Sample A Female 67.9
Sample B Female 75.2
Sample C Male 93.7
Sample D Male 72.2
Ventral spinal cord
nTPM: 98.1
Samples: 4

Max nTPM: 115.4
Min nTPM: 75.6
Sample A Female 75.6
Sample B Female 108.9
Sample C Male 115.4
Sample D Male 92.3

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