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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:37.5 nTPM
HPA:37.5 nTPM
GTEx:67.9 nTPM
FANTOM5:80.8 Scaled Tags Per Million
Pig:63.7 nTPM
Mouse:181.1 nTPM

AMYGDALA - HPA Brain RNA-seq
Max nTPM 37.5
Sample id Sample description nTPM
Amygdala
nTPM: 28.0
2814 Male, age 76, right hemisphere 39.5
2517 Female, age 94, left hemisphere 26.7
2514 Male, age 75, right hemisphere 26.4
2695 Female, age 67, right hemisphere 25.0
1987 Female, age 91, left hemisphere 22.5
Basal amygdala
nTPM: 37.5
2243 Female, age 91, right hemisphere 53.0
2685 Female, age 94, left hemisphere 45.1
1955 Male, age 76, both hemispheres 37.6
2827 Female, age 67, right hemisphere 33.6
2609 Male, age 75, right hemisphere 28.1
2110 Male, age 80, left hemisphere 27.4
Central amygdala
nTPM: 34.4
2239 Male, age 80, left hemisphere 42.9
1905 Male, age 76, both hemispheres 40.4
2826 Female, age 94, left hemisphere 33.6
2701 Female, age 91, right hemisphere 32.0
2515 Male, age 75, right hemisphere 22.9
Corticomedial amygdala
nTPM: 34.8
2535 Female, age 67, right hemisphere 44.3
2242 Female, age 91, right hemisphere 39.6
2240 Male, age 76, both hemispheres 36.6
2829 Male, age 80, left hemisphere 36.3
2429 Female, age 94, left hemisphere 30.7
2428 Male, age 75, right hemisphere 21.5
Lateral amygdala
nTPM: 31.9
2534 Female, age 94, left hemisphere 39.4
1883 Male, age 76, both hemispheres 38.6
2256 Male, age 80, left hemisphere 33.7
2255 Female, age 91, right hemisphere 33.6
2830 Female, age 67, right hemisphere 23.2
2516 Male, age 75, right hemisphere 22.8
Stria terminalis, bed nucleus
nTPM: 35.7
2486 Female, age 94, both hemispheres 39.2
1974 Female, age 91, both hemispheres 37.4
2201 Male, age 74, unknown 30.5

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 67.9
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 67.9
Samples: 152

Max nTPM: 123.3
Min nTPM: 25.4
Std nTPM: 18.7
Median nTPM: 65.8
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 123.3
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 121.6
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 121.1
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 111.7
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 110.3
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 104.6
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 102.2
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 98.4
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 97.5
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 97.2
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 95.4
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 95.2
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 94.0
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 92.4
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 92.2
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 92.1
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 91.7
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 91.7
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 91.3
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 90.6
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 90.5
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 90.0
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 89.3
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 89.2
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 88.1
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 87.7
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 87.1
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 86.4
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 85.7
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 85.2
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 84.9
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 84.4
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 82.5
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 82.0
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 82.0
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 81.6
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 81.1
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 80.0
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 79.7
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 79.6
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 79.4
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 79.1
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 78.4
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 78.3
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 78.0
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 77.9
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 77.3
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 76.1
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 75.3
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 74.1
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 73.7
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 73.2
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 73.2
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 72.9
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 72.9
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 72.1
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 72.1
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 71.7
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 71.3
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 70.7
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 70.7
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 70.4
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 69.9
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 69.7
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 69.6
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 69.5
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 69.2
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 68.1
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 68.0
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 67.9
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 67.8
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 67.2
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 66.4
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 66.1
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 66.1
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 65.9
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 65.8
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 65.1
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 64.9
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 64.6
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 64.6
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 64.3
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 64.0
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 63.8
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 63.8
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 63.5
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 63.4
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 62.6
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 62.6
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 61.9
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 61.7
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 61.5
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 61.3
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 60.9
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 60.8
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 59.7
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 59.5
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 58.6
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 57.9
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 57.8
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 57.8
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 57.7
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 57.6
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 57.5
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 57.1
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 57.0
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 56.4
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 56.4
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 56.0
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 55.6
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 54.9
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 53.9
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 53.8
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 53.5
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 53.3
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 53.0
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 52.8
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 52.6
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 51.8
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 51.6
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 51.5
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 51.5
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 50.3
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 50.1
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 49.9
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 49.8
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 49.7
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 48.9
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 48.9
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 48.6
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 48.5
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 48.1
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 47.9
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 47.9
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 46.3
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 45.6
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 45.2
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 45.1
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 44.8
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 44.6
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 43.9
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 43.0
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 43.0
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 42.5
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 42.5
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 42.2
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 41.0
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 39.7
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 39.6
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 32.7
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 32.4
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 25.4
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 80.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 80.8
FF:10151-102I7 76 years, female 80.8

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 63.7
Pig sample Sample description nTPM
Amygdala
nTPM: 63.7
Samples: 4

Max nTPM: 89.4
Min nTPM: 47.3
Sample A Female 89.4
Sample B Female 47.3
Sample C Male 59.0
Sample D Male 59.0

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 181.1
Mouse sample Sample description nTPM
Amygdala
nTPM: 181.1
Samples: 4

Max nTPM: 201.7
Min nTPM: 169.2
Sample A Male 174.4
Sample B Male 179.2
Sample C Female 201.7
Sample D Female 169.2

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