MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:30.9 nTPM
HPA:30.9 nTPM
GTEx:45.6 nTPM
FANTOM5:56.4 Scaled Tags Per Million
Pig:82.6 nTPM
Mouse:127.9 nTPM

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 30.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 26.8
2666 Male, age 74, left hemisphere 34.7
2219 Male, age 76, both hemispheres 30.3
1827 Male, age 72, unknown 29.5
2019 Male, age 18, unknown 28.9
2828 Female, age 72, unknown 27.5
2586 Male, age 75, left hemisphere 27.3
1870 Female, age 42, unknown 26.6
1833 Male, age 53, unknown 22.3
2411 Female, age 72, unknown 20.4
1830 Male, age 51, unknown 20.0
Dorsal raphe nucleus
nTPM: 18.3
2750 Male, age 76, both hemispheres 21.3
1828 Male, age 53, unknown 20.6
2047 Male, age 72, unknown 18.4
2298 Female, age 72, unknown 15.7
2016 Female, age 72, unknown 15.6
Inferior colliculus
nTPM: 24.6
2849 Male, age 72, unknown 28.9
1890 Male, age 53, unknown 24.6
1848 Female, age 42, unknown 22.6
2097 Female, age 72, unknown 22.4
Median raphe nucleus
nTPM: 28.8
2220 Male, age 76, midline 28.8
Pedunculopontine tegmental nucleus
nTPM: 27.2
2334 Male, age 80, both hemispheres 28.8
2338 Male, age 61, both hemispheres 26.6
1921 Female, age 85, both hemispheres 26.3
Periaquaductal grey, anterior
nTPM: 27.2
2502 Female, age 75, unknown 27.9
1795 Male, age 51, unknown 27.2
1947 Male, age 18, unknown 26.6
Periaquaductal grey, dorsal
nTPM: 20.9
2850 Male, age 76, both hemispheres 25.3
1831 Male, age 72, unknown 21.7
2464 Female, age 72, unknown 18.8
1840 Male, age 53, unknown 17.9
Periaquaductal grey, lateral
nTPM: 19.5
2140 Male, age 76, both hemispheres 20.2
2053 Male, age 18, unknown 20.0
2272 Male, age 74, both hemispheres 18.1
Pretectal area
nTPM: 30.9
1816 Male, age 51, unknown 46.4
1817 Female, age 42, unknown 41.5
2007 Male, age 72, unknown 38.7
1944 Female, age 72, unknown 37.8
1815 Male, age 53, unknown 34.9
2667 Female, age 75, unknown 32.5
2407 Male, age 75, both hemispheres 29.8
2825 Male, age 18, unknown 22.6
2316 Male, age 76, right hemisphere 21.1
2224 Female, age 72, unknown 18.8
2273 Male, age 74, both hemispheres 16.3
Red nucleus
nTPM: 25.1
2785 Male, age 18, unknown 31.9
2584 Male, age 75, left hemisphere 26.7
2588 Male, age 74, left hemisphere 26.3
2823 Male, age 76, right hemisphere 25.8
1865 Male, age 51, unknown 25.1
1821 Female, age 72, unknown 24.5
2503 Female, age 72, unknown 24.3
1904 Male, age 53, unknown 24.1
2725 Female, age 75, unknown 24.0
1954 Female, age 42, unknown 23.4
2227 Male, age 72, unknown 23.1
2769 Male, age 72, unknown 22.0
Substantia nigra
nTPM: 24.7
1889 Female, age 72, unknown 31.6
2665 Male, age 74, both hemispheres 31.1
1941 Male, age 53, unknown 28.7
1916 Female, age 42, unknown 28.1
1851 Male, age 51, unknown 25.5
2583 Male, age 75, right hemisphere 23.3
2699 Male, age 18, unknown 21.4
2241 Male, age 72, unknown 20.3
2590 Female, age 75, unknown 19.5
2409 Female, age 72, unknown 17.8
Superior colliculus
nTPM: 28.0
2087 Female, age 72, unknown 32.0
2668 Female, age 75, unknown 32.0
1895 Male, age 76, right hemisphere 30.8
1796 Male, age 53, unknown 30.3
2261 Male, age 18, unknown 29.3
1913 Female, age 42, unknown 28.6
2664 Male, age 75, both hemispheres 27.1
1839 Male, age 51, unknown 24.7
2587 Male, age 74, left hemisphere 23.2
1995 Male, age 72, unknown 22.2
Ventral tegmental area
nTPM: 23.4
2218 Male, age 76, both hemispheres 29.0
1915 Female, age 42, unknown 25.5
2223 Female, age 72, unknown 24.3
2410 Female, age 72, unknown 22.4
1942 Male, age 51, unknown 20.2
2021 Male, age 53, unknown 19.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 45.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 45.6
Samples: 139

Max nTPM: 99.0
Min nTPM: 28.2
Std nTPM: 11.2
Median nTPM: 43.0
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 99.0
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 76.2
GTEX-N7MS-0011-R2a-SM-2HML6 60-69 years, male 69.4
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 68.6
GTEX-1E1VI-0011-R2a-SM-9QEGS 50-59 years, male 67.4
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 66.7
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 65.5
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 65.0
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 64.6
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 64.3
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 64.2
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 56.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 56.4
FF:10158-103A5 76 years, female 56.4

MIDBRAIN - Pig RNA-seqi
Average nTPM 82.6
Pig sample Sample description nTPM
Midbrain
nTPM: 76.7
Samples: 4

Max nTPM: 102.7
Min nTPM: 56.6
Sample A Female 63.9
Sample B Female 56.6
Sample C Male 102.7
Sample D Male 83.5
Periaqueductal gray
nTPM: 51.3
Samples: 3

Max nTPM: 58.0
Min nTPM: 47.3
Sample B Female 47.3
Sample C Male 58.0
Sample D Male 48.5
Substantia nigra
nTPM: 61.3
Samples: 4

Max nTPM: 72.2
Min nTPM: 46.4
Sample A Female 72.2
Sample B Female 46.4
Sample C Male 71.1
Sample D Male 55.6
Superior colliculi
nTPM: 82.6
Samples: 4

Max nTPM: 101.6
Min nTPM: 50.1
Sample A Female 88.6
Sample B Female 50.1
Sample C Male 101.6
Sample D Male 90.2

MIDBRAIN - Mouse RNA-seqi
Average nTPM 127.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 127.9
Samples: 4

Max nTPM: 131.6
Min nTPM: 124.1
Sample A Male 126.2
Sample B Male 124.1
Sample C Female 131.6
Sample D Female 129.7

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The Human Protein Atlas

The Human Protein Atlas project is funded
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