MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:211.4 nTPM
HPA:211.4 nTPM
GTEx:89.1 nTPM
FANTOM5:516.7 Scaled Tags Per Million
Mouse:63.1 nTPM
Allen mouse:13.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 211.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 141.3
2411 Female, age 72, unknown 207.7
1830 Male, age 51, unknown 193.5
2019 Male, age 18, unknown 183.5
1833 Male, age 53, unknown 170.6
1870 Female, age 42, unknown 158.0
2828 Female, age 72, unknown 128.5
2586 Male, age 75, left hemisphere 116.1
2666 Male, age 74, left hemisphere 88.4
2219 Male, age 76, both hemispheres 86.2
1827 Male, age 72, unknown 80.1
Dorsal raphe nucleus
nTPM: 94.9
2750 Male, age 76, both hemispheres 248.9
1828 Male, age 53, unknown 80.2
2016 Female, age 72, unknown 78.1
2047 Male, age 72, unknown 39.4
2298 Female, age 72, unknown 27.9
Inferior colliculus
nTPM: 63.9
1890 Male, age 53, unknown 75.1
1848 Female, age 42, unknown 73.5
2849 Male, age 72, unknown 61.6
2097 Female, age 72, unknown 45.3
Median raphe nucleus
nTPM: 75.8
2220 Male, age 76, midline 75.8
Pedunculopontine tegmental nucleus
nTPM: 107.8
2334 Male, age 80, both hemispheres 138.5
1921 Female, age 85, both hemispheres 100.8
2338 Male, age 61, both hemispheres 84.2
Periaquaductal grey, anterior
nTPM: 64.4
1947 Male, age 18, unknown 71.9
2502 Female, age 75, unknown 68.3
1795 Male, age 51, unknown 53.0
Periaquaductal grey, dorsal
nTPM: 35.4
2464 Female, age 72, unknown 97.8
1831 Male, age 72, unknown 43.8
1840 Male, age 53, unknown 0.0
2850 Male, age 76, both hemispheres 0.0
Periaquaductal grey, lateral
nTPM: 50.5
2272 Male, age 74, both hemispheres 89.2
2053 Male, age 18, unknown 55.6
2140 Male, age 76, both hemispheres 6.9
Pretectal area
nTPM: 78.2
2316 Male, age 76, right hemisphere 156.4
1815 Male, age 53, unknown 113.0
2407 Male, age 75, both hemispheres 111.1
2007 Male, age 72, unknown 91.2
1817 Female, age 42, unknown 79.5
2825 Male, age 18, unknown 70.7
2667 Female, age 75, unknown 65.3
2273 Male, age 74, both hemispheres 64.4
2224 Female, age 72, unknown 44.0
1944 Female, age 72, unknown 33.8
1816 Male, age 51, unknown 31.0
Red nucleus
nTPM: 211.4
2823 Male, age 76, right hemisphere 270.2
2227 Male, age 72, unknown 245.9
2769 Male, age 72, unknown 245.7
1904 Male, age 53, unknown 239.8
2785 Male, age 18, unknown 235.4
1865 Male, age 51, unknown 232.1
2503 Female, age 72, unknown 215.2
2588 Male, age 74, left hemisphere 213.0
1821 Female, age 72, unknown 199.2
1954 Female, age 42, unknown 160.9
2584 Male, age 75, left hemisphere 155.4
2725 Female, age 75, unknown 123.6
Substantia nigra
nTPM: 79.7
2590 Female, age 75, unknown 141.5
2583 Male, age 75, right hemisphere 126.3
1851 Male, age 51, unknown 106.2
1889 Female, age 72, unknown 89.2
2409 Female, age 72, unknown 82.0
1941 Male, age 53, unknown 70.5
2699 Male, age 18, unknown 62.1
1916 Female, age 42, unknown 46.5
2241 Male, age 72, unknown 40.3
2665 Male, age 74, both hemispheres 32.1
Superior colliculus
nTPM: 111.6
1913 Female, age 42, unknown 201.9
1995 Male, age 72, unknown 186.2
1895 Male, age 76, right hemisphere 138.0
2587 Male, age 74, left hemisphere 120.2
1839 Male, age 51, unknown 114.4
2668 Female, age 75, unknown 108.1
1796 Male, age 53, unknown 84.1
2261 Male, age 18, unknown 56.8
2087 Female, age 72, unknown 54.5
2664 Male, age 75, both hemispheres 52.0
Ventral tegmental area
nTPM: 116.4
2223 Female, age 72, unknown 204.8
2410 Female, age 72, unknown 158.5
2021 Male, age 53, unknown 92.3
1942 Male, age 51, unknown 89.0
2218 Male, age 76, both hemispheres 88.6
1915 Female, age 42, unknown 65.2

MIDBRAIN - GTEx RNA-seqi
Average nTPM 89.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 89.1
Samples: 139

Max nTPM: 409.2
Min nTPM: 20.3
Std nTPM: 56.8
Median nTPM: 78.6
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 409.2
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 314.0
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 275.5
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 258.2
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 224.6
GTEX-132Q8-0011-R2b-SM-5EQ5Z 60-69 years, male 202.5
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 184.4
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 178.5
GTEX-131XH-0011-R2b-SM-5DUVY 50-59 years, male 173.6
GTEX-WHSE-0011-R2A-SM-3P5ZL 20-29 years, male 165.2
GTEX-T5JC-0011-R2A-SM-32PLZ 20-29 years, male 161.7
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 516.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 516.7
FF:10158-103A5 76 years, female 516.7

MIDBRAIN - Mouse RNA-seqi
Average nTPM 63.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 63.1
Samples: 4

Max nTPM: 71.1
Min nTPM: 53.8
Sample A Male 53.8
Sample B Male 58.2
Sample C Female 71.1
Sample D Female 69.4

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 13.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 13.0
69514530 Antisense, RP_050419_03_E11, Mouse strain C57BL/6J (56 days, male) 13.0

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