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BRAIN THALAMUS Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Thalamus
THALAMUS - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:207.3 nTPM
HPA:207.3 nTPM
FANTOM5:109.8 Scaled Tags Per Million
Pig:225.4 nTPM
Mouse:289.0 nTPM
Allen mouse:19.2 Expression energy

THALAMUS - HPA Brain RNA-seq
Max nTPM 207.3
Sample id Sample description nTPM
Anterior thalamic nucleus, ventral
nTPM: 145.2
2032 Female, age 42, unknown 220.6
2497 Male, age 66, unknown 153.1
2396 Male, age 61, right hemisphere 62.0
Centromedial thalamic nucleus
nTPM: 130.4
2401 Male, age 76, right hemisphere 211.1
2279 Female, age 85, left hemisphere 49.7
Habenula
nTPM: 207.3
1957 Male, age 80, both hemispheres 242.1
2276 Male, age 66, unknown 234.6
2203 Male, age 61, left hemisphere 202.1
2252 Male, age 62, unknown 150.5
Lateral geniculate body
nTPM: 182.4
2399 Male, age 61, left hemisphere 236.2
2106 Female, age 67, right hemisphere 231.5
1953 Male, age 62, unknown 220.5
2035 Female, age 72, unknown 218.7
2857 Male, age 74, right hemisphere 195.0
2659 Male, age 66, unknown 153.7
2841 Male, age 80, both hemispheres 105.8
2575 Female, age 94, right hemisphere 97.7
Lateral thalamic nuclei
nTPM: 150.1
1903 Male, age 76, left hemisphere 202.4
2661 Female, age 72, unknown 176.7
2577 Male, age 74, both hemispheres 150.1
2573 Female, age 94, left hemisphere 119.8
2765 Female, age 67, both hemispheres 101.4
Medial dorsal thalamic nucleus
nTPM: 193.3
2498 Male, age 66, unknown 261.4
1859 Male, age 76, both hemispheres 222.7
2492 Male, age 75, right hemisphere 219.4
2283 Male, age 80, right hemisphere 213.9
2026 Male, age 62, unknown 208.0
1971 Male, age 61, right hemisphere 197.2
1810 Male, age 48, unknown 196.7
2576 Male, age 74, both hemispheres 191.1
1930 Female, age 42, unknown 177.6
2572 Female, age 94, right hemisphere 162.8
2660 Female, age 72, unknown 160.0
2402 Female, age 67, both hemispheres 155.8
2039 Female, age 72, unknown 146.1
Medial geniculate body
nTPM: 161.6
1811 Female, age 42, unknown 210.1
2657 Male, age 74, right hemisphere 168.6
2207 Male, age 80, right hemisphere 166.9
2650 Female, age 94, left hemisphere 166.7
2571 Male, age 75, right hemisphere 158.6
2217 Female, age 72, unknown 148.1
2049 Male, age 76, both hemispheres 112.2
Nucleus reuniens
nTPM: 91.0
2212 Female, age 67, left hemisphere 110.7
2205 Male, age 80, left hemisphere 105.6
2210 Female, age 85, left hemisphere 56.7
Nucleus rhomboideus
nTPM: 121.3
2206 Male, age 80, both hemispheres 222.4
2280 Female, age 85, left hemisphere 74.0
2213 Female, age 67, left hemisphere 67.5
Posterior thalamic nucleus
nTPM: 184.1
2655 Male, age 74, right hemisphere 210.8
2266 Male, age 76, right hemisphere 192.1
2649 Female, age 94, both hemispheres 175.9
2495 Female, age 67, right hemisphere 157.6
Pulvinar
nTPM: 195.3
1972 Male, age 62, unknown 236.3
1899 Female, age 42, unknown 224.7
2398 Male, age 61, left hemisphere 216.8
1932 Male, age 80, right hemisphere 208.3
2582 Female, age 72, unknown 196.5
1929 Male, age 48, unknown 187.0
2724 Male, age 74, right hemisphere 176.9
2214 Male, age 76, right hemisphere 176.4
2496 Female, age 67, right hemisphere 173.8
2499 Male, age 66, unknown 156.7
Subthalamic nucleus
nTPM: 119.8
2658 Male, age 74, both hemispheres 177.7
2406 Female, age 72, unknown 157.0
2275 Male, age 66, unknown 126.8
2282 Male, age 61, both hemispheres 124.4
2124 Male, age 62, unknown 102.3
2779 Female, age 42, unknown 96.4
2216 Male, age 48, unknown 87.1
2056 Female, age 72, unknown 86.8
Ventral posterolateral thalamic nucleus
nTPM: 185.6
2740 Male, age 76, right hemisphere 234.0
2581 Female, age 72, unknown 201.5
2397 Male, age 61, right hemisphere 191.1
2197 Male, age 80, both hemispheres 178.3
2578 Male, age 74, both hemispheres 157.2
2570 Male, age 75, right hemisphere 151.6
Ventral posteromedial thalamic nucleus
nTPM: 172.0
2202 Male, age 61, left hemisphere 202.4
2758 Male, age 80, both hemispheres 195.1
2653 Male, age 74, both hemispheres 178.5
2281 Male, age 75, right hemisphere 148.4
2127 Male, age 76, right hemisphere 135.8
Ventral thalamic nuclei
nTPM: 165.7
1845 Male, age 48, unknown 214.0
2858 Female, age 72, unknown 207.0
1912 Female, age 42, unknown 192.6
1860 Male, age 76, both hemispheres 188.7
2285 Male, age 62, unknown 170.6
2204 Male, age 80, both hemispheres 150.0
2580 Male, age 66, unknown 136.7
2652 Male, age 74, left hemisphere 116.1
2291 Female, age 72, unknown 115.2
Ventromedial nucleus
nTPM: 130.8
1982 Female, age 72, unknown 142.2
1822 Female, age 42, unknown 119.4
Zona incerta
nTPM: 117.2
2208 Male, age 80, right hemisphere 163.6
2822 Male, age 74, right hemisphere 133.3
2663 Female, age 72, unknown 126.6
2403 Male, age 62, unknown 87.0
2215 Male, age 66, unknown 75.6

THALAMUS - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 109.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Thalamus
Scaled Tags Per Million: 109.8
FF:10154-103A1 76 years, female 109.8

THALAMUS - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 225.4
Pig sample Sample description nTPM
Thalamus
nTPM: 225.4
Samples: 4

Max nTPM: 352.9
Min nTPM: 108.7
Sample A Female 352.9
Sample B Female 209.3
Sample C Male 230.7
Sample D Male 108.7

THALAMUS - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 289.0
Mouse sample Sample description nTPM
Thalamus
nTPM: 289.0
Samples: 4

Max nTPM: 328.4
Min nTPM: 245.5
Sample A Male 245.5
Sample B Male 319.7
Sample C Female 262.5
Sample D Female 328.4

THALAMUS - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 19.2
Allen experiment id Experiment description Expression energy
Thalamus
Expression energy: 19.2
69262230 Antisense, RP_050301_01_F10, Mouse strain C57BL/6J (56 days, male) 26.8
70812774 Antisense, RP_050712_02_E12, Mouse strain C57BL/6J (56 days, male) 11.6

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