BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Not detected
Neuronal cells: Medium
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:42.4 nTPM
HPA:42.4 nTPM
GTEx:49.4 nTPM
FANTOM5:44.9 Scaled Tags Per Million
Pig:22.2 nTPM
Mouse:20.4 nTPM
Allen mouse:0.0 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA057888
Glial cells Not detected
Neuronal cells Medium


BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 42.4
Sample id Sample description nTPM
Caudate nucleus
nTPM: 42.3
2481 Female, age 94, left hemisphere 43.8
2846 Female, age 79, unknown 43.5
1857 Female, age 85, left hemisphere 43.2
1854 Male, age 80, left hemisphere 42.8
2290 Female, age 72, unknown 42.8
1781 Male, age 74, unknown 41.6
2288 Male, age 75, left hemisphere 40.2
2289 Male, age 61, right hemisphere 40.2
Claustrum
nTPM: 39.1
2198 Male, age 80, both hemispheres 41.3
2568 Male, age 61, both hemispheres 40.4
2392 Female, age 94, both hemispheres 39.7
2284 Female, age 91, both hemispheres 39.2
2491 Male, age 75, both hemispheres 39.2
2196 Female, age 79, unknown 38.8
1956 Male, age 74, unknown 37.8
2645 Female, age 72, unknown 37.6
2292 Female, age 85, both hemispheres 37.4
Globus pallidus, externus
nTPM: 40.1
2772 Female, age 79, unknown 41.3
1996 Male, age 80, right hemisphere 40.7
2646 Male, age 61, right hemisphere 40.4
2395 Male, age 75, both hemispheres 39.5
2567 Female, age 72, unknown 38.3
Globus pallidus, internus
nTPM: 40.0
2483 Female, age 94, right hemisphere 42.8
2287 Male, age 75, right hemisphere 41.1
2778 Female, age 91, both hemispheres 39.9
2566 Female, age 72, unknown 39.5
1818 Male, age 74, unknown 39.4
2111 Female, age 85, right hemisphere 38.8
2037 Male, age 80, right hemisphere 38.7
Nucleus accumbens
nTPM: 42.4
1856 Female, age 91, right hemisphere 44.5
1806 Female, age 85, left hemisphere 43.3
2824 Male, age 61, right hemisphere 42.5
2286 Male, age 75, left hemisphere 42.2
2698 Female, age 72, unknown 42.2
1783 Male, age 74, unknown 41.9
2391 Female, age 94, left hemisphere 41.3
2732 Male, age 80, right hemisphere 40.9
Nucleus basalis of Meynert
nTPM: 41.0
2393 Male, age 80, right hemisphere 41.7
2484 Female, age 94, left hemisphere 41.4
2569 Male, age 61, both hemispheres 41.4
2821 Male, age 75, both hemispheres 39.6
Nucleus of the diagonal band
nTPM: 40.3
1979 Male, age 74, unknown 41.5
2775 Male, age 80, right hemisphere 40.5
1812 Female, age 91, both hemispheres 40.4
2029 Male, age 61, right hemisphere 39.7
2195 Female, age 85, both hemispheres 39.6
Olfactory tubercle
nTPM: 40.1
1846 Male, age 80, right hemisphere 41.5
1998 Female, age 91, both hemispheres 40.3
2856 Male, age 75, right hemisphere 39.8
2487 Female, age 94, left hemisphere 38.7
Putamen
nTPM: 42.3
1838 Male, age 80, right hemisphere 44.4
2466 Female, age 79, unknown 43.8
1937 Female, age 91, right hemisphere 43.4
1829 Male, age 74, unknown 42.6
2482 Female, age 94, left hemisphere 41.2
2489 Female, age 72, unknown 40.6
2647 Male, age 75, left hemisphere 40.2
Septal nuclei
nTPM: 39.4
2031 Female, age 72, unknown 39.7
2009 Female, age 91, both hemispheres 39.6
2199 Male, age 80, right hemisphere 39.6
1960 Male, age 74, unknown 39.4
2059 Female, age 85, both hemispheres 39.2
2394 Male, age 61, left hemisphere 39.2
2629 Female, age 94, right hemisphere 39.2

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 49.4
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 43.6
Samples: 246

Max nTPM: 82.3
Min nTPM: 19.6
Std nTPM: 11.0
Median nTPM: 42.3
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 82.3
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 80.1
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 78.3
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 76.6
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 76.2
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 75.3
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 70.2
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 70.1
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 69.5
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 68.0
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 66.1
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 49.4
Samples: 246

Max nTPM: 98.4
Min nTPM: 24.3
Std nTPM: 11.6
Median nTPM: 47.9
GTEX-1LVAO-0011-R6b-SM-EZ6MX 60-69 years, male 98.4
GTEX-12WSF-0011-R6b-SM-5HL8W 70-79 years, male 86.0
GTEX-12WSH-0011-R6b-SM-5P9F4 50-59 years, male 82.9
GTEX-1HR9M-0011-R6a-SM-ARU6Z 60-69 years, male 81.6
GTEX-147F4-0011-R6b-SM-5S2UP 50-59 years, male 79.3
GTEX-1J8Q2-0011-R6a-SM-CKZPG 60-69 years, male 77.1
GTEX-11DZ1-0011-R6b-SM-DNZZG 50-59 years, male 75.6
GTEX-14PQA-0011-R6b-SM-6AJAM 50-59 years, female 73.0
GTEX-12WSC-0011-R6b-SM-5LU99 50-59 years, male 72.9
GTEX-14753-0011-R6b-SM-5S2UD 60-69 years, male 72.8
GTEX-18A6Q-0011-R6a-SM-7LG6R 60-69 years, male 72.8
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Brain - Putamen (basal ganglia)
Average nTPM: 46.3
Samples: 205

Max nTPM: 81.1
Min nTPM: 25.3
Std nTPM: 11.1
Median nTPM: 45.3
GTEX-12WSI-0011-R7b-SM-5GU78 50-59 years, male 81.1
GTEX-11PRG-0011-R7a-SM-DNZZT 50-59 years, male 74.1
GTEX-11DYG-0011-R7b-SM-EXUS6 60-69 years, male 74.0
GTEX-S7SE-0011-R7A-SM-2XCDI 50-59 years, male 71.2
GTEX-1J8Q2-0011-R7a-SM-CKZPF 60-69 years, male 70.6
GTEX-1ICLZ-0011-R7a-SM-ARZLU 60-69 years, male 69.9
GTEX-12ZZW-0011-R7a-SM-5DUWC 50-59 years, male 69.4
GTEX-1LVAO-0011-R7a-SM-EYYWZ 60-69 years, male 69.2
GTEX-T5JC-0011-R7A-SM-32PME 20-29 years, male 68.4
GTEX-16YQH-0011-R7a-SM-79ON1 30-39 years, male 68.3
GTEX-1HCVE-0011-R7b-SM-A9G1I 50-59 years, male 68.3
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 44.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 44.2
FF:10164-103B2 76 years, female 44.2
Globus pallidus
Scaled Tags Per Million: 24.0
FF:10175-103C4 60 years, female 27.6
FF:10161-103A8 76 years, female 20.4
Nucleus accumbens
Scaled Tags Per Million: 16.2
FF:10037-101F1 23-56 years, mixed 16.2
Putamen
Scaled Tags Per Million: 44.9
FF:10176-103C5 60 years, female 44.9

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 22.2
Pig sample Sample description nTPM
Caudate
nTPM: 21.0
Samples: 4

Max nTPM: 25.8
Min nTPM: 16.5
Sample A Female 16.5
Sample B Female 23.8
Sample C Male 25.8
Sample D Male 17.8
Putamen
nTPM: 22.2
Samples: 4

Max nTPM: 29.6
Min nTPM: 18.1
Sample A Female 18.1
Sample B Female 20.0
Sample C Male 29.6
Sample D Male 21.2
Septum
nTPM: 20.0
Samples: 4

Max nTPM: 21.2
Min nTPM: 18.0
Sample A Female 19.7
Sample B Female 21.1
Sample C Male 18.0
Sample D Male 21.2
Ventral pallidum
nTPM: 18.5
Samples: 4

Max nTPM: 23.4
Min nTPM: 15.4
Sample A Female 16.7
Sample B Female 23.4
Sample C Male 18.3
Sample D Male 15.4

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 20.4
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 16.8
Samples: 4

Max nTPM: 20.9
Min nTPM: 12.5
Sample A Male 20.3
Sample B Male 20.9
Sample C Female 13.3
Sample D Female 12.5
Septum
nTPM: 20.4
Samples: 4

Max nTPM: 24.6
Min nTPM: 16.3
Sample A Male 18.3
Sample B Male 22.5
Sample C Female 24.6
Sample D Female 16.3
Ventral forebrain
nTPM: 15.6
Samples: 4

Max nTPM: 20.9
Min nTPM: 13.3
Sample A Male 13.4
Sample B Male 13.3
Sample C Female 20.9
Sample D Female 14.6

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.0
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.0
68162257 Antisense, RP_041122_02_F02, Mouse strain C57BL/6J (56 days, male) 0.0
Pallidum
Expression energy: 0.0
68162257 Antisense, RP_041122_02_F02, Mouse strain C57BL/6J (56 days, male) 0.0

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