MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:41.3 nTPM
HPA:41.3 nTPM
GTEx:34.9 nTPM
FANTOM5:18.6 Scaled Tags Per Million
Pig:27.2 nTPM
Mouse:15.8 nTPM
Allen mouse:0.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 41.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 40.2
1827 Male, age 72, unknown 42.1
2586 Male, age 75, left hemisphere 42.0
2666 Male, age 74, left hemisphere 40.7
2828 Female, age 72, unknown 40.7
2411 Female, age 72, unknown 39.9
1833 Male, age 53, unknown 39.8
1870 Female, age 42, unknown 39.7
2219 Male, age 76, both hemispheres 39.7
2019 Male, age 18, unknown 39.4
1830 Male, age 51, unknown 38.4
Dorsal raphe nucleus
nTPM: 41.3
2298 Female, age 72, unknown 43.1
2047 Male, age 72, unknown 42.1
2016 Female, age 72, unknown 41.2
1828 Male, age 53, unknown 40.2
2750 Male, age 76, both hemispheres 39.9
Inferior colliculus
nTPM: 41.3
2097 Female, age 72, unknown 43.4
2849 Male, age 72, unknown 40.9
1848 Female, age 42, unknown 40.5
1890 Male, age 53, unknown 40.5
Median raphe nucleus
nTPM: 40.6
2220 Male, age 76, midline 40.6
Pedunculopontine tegmental nucleus
nTPM: 40.2
1921 Female, age 85, both hemispheres 41.3
2334 Male, age 80, both hemispheres 40.6
2338 Male, age 61, both hemispheres 38.6
Periaquaductal grey, anterior
nTPM: 41.0
2502 Female, age 75, unknown 41.2
1947 Male, age 18, unknown 41.0
1795 Male, age 51, unknown 40.7
Periaquaductal grey, dorsal
nTPM: 41.0
1840 Male, age 53, unknown 42.5
1831 Male, age 72, unknown 40.9
2464 Female, age 72, unknown 40.2
2850 Male, age 76, both hemispheres 40.2
Periaquaductal grey, lateral
nTPM: 40.6
2053 Male, age 18, unknown 41.7
2140 Male, age 76, both hemispheres 40.5
2272 Male, age 74, both hemispheres 39.5
Pretectal area
nTPM: 41.3
1816 Male, age 51, unknown 43.2
1944 Female, age 72, unknown 42.2
2224 Female, age 72, unknown 41.9
1817 Female, age 42, unknown 41.5
2007 Male, age 72, unknown 41.5
2667 Female, age 75, unknown 41.5
1815 Male, age 53, unknown 41.3
2273 Male, age 74, both hemispheres 41.1
2825 Male, age 18, unknown 40.7
2316 Male, age 76, right hemisphere 40.5
2407 Male, age 75, both hemispheres 39.1
Red nucleus
nTPM: 39.8
1821 Female, age 72, unknown 41.5
2725 Female, age 75, unknown 40.9
1904 Male, age 53, unknown 40.4
2503 Female, age 72, unknown 40.1
2227 Male, age 72, unknown 39.9
1954 Female, age 42, unknown 39.6
2588 Male, age 74, left hemisphere 39.6
2785 Male, age 18, unknown 39.6
2823 Male, age 76, right hemisphere 39.6
1865 Male, age 51, unknown 39.3
2769 Male, age 72, unknown 39.0
2584 Male, age 75, left hemisphere 38.8
Substantia nigra
nTPM: 40.7
1916 Female, age 42, unknown 43.6
1851 Male, age 51, unknown 42.0
2699 Male, age 18, unknown 41.8
2665 Male, age 74, both hemispheres 41.3
2583 Male, age 75, right hemisphere 40.7
1889 Female, age 72, unknown 40.3
2241 Male, age 72, unknown 40.0
1941 Male, age 53, unknown 39.4
2590 Female, age 75, unknown 39.1
2409 Female, age 72, unknown 38.8
Superior colliculus
nTPM: 40.8
1796 Male, age 53, unknown 42.8
1895 Male, age 76, right hemisphere 41.1
2587 Male, age 74, left hemisphere 41.0
2668 Female, age 75, unknown 40.9
2664 Male, age 75, both hemispheres 40.8
2087 Female, age 72, unknown 40.6
1839 Male, age 51, unknown 40.5
1913 Female, age 42, unknown 40.3
2261 Male, age 18, unknown 40.0
1995 Male, age 72, unknown 39.9
Ventral tegmental area
nTPM: 40.3
1915 Female, age 42, unknown 42.3
2218 Male, age 76, both hemispheres 40.8
1942 Male, age 51, unknown 40.5
2410 Female, age 72, unknown 40.2
2021 Male, age 53, unknown 39.8
2223 Female, age 72, unknown 38.3

MIDBRAIN - GTEx RNA-seqi
Average nTPM 34.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 34.9
Samples: 139

Max nTPM: 64.8
Min nTPM: 19.2
Std nTPM: 7.2
Median nTPM: 34.6
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 64.8
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 59.0
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 57.0
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 51.5
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 51.1
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 50.7
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 48.5
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 47.1
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 46.3
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 45.4
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 43.8
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 18.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 18.6
FF:10158-103A5 76 years, female 18.6

MIDBRAIN - Pig RNA-seqi
Average nTPM 27.2
Pig sample Sample description nTPM
Midbrain
nTPM: 21.2
Samples: 4

Max nTPM: 22.2
Min nTPM: 19.0
Sample A Female 22.2
Sample B Female 19.0
Sample C Male 22.2
Sample D Male 21.5
Periaqueductal gray
nTPM: 17.7
Samples: 3

Max nTPM: 18.2
Min nTPM: 17.0
Sample B Female 18.0
Sample C Male 18.2
Sample D Male 17.0
Substantia nigra
nTPM: 21.4
Samples: 4

Max nTPM: 27.2
Min nTPM: 17.0
Sample A Female 27.2
Sample B Female 19.9
Sample C Male 21.5
Sample D Male 17.0
Superior colliculi
nTPM: 27.2
Samples: 4

Max nTPM: 32.4
Min nTPM: 21.5
Sample A Female 32.4
Sample B Female 32.2
Sample C Male 22.6
Sample D Male 21.5

MIDBRAIN - Mouse RNA-seqi
Average nTPM 15.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 15.8
Samples: 4

Max nTPM: 18.5
Min nTPM: 12.2
Sample A Male 18.5
Sample B Male 14.7
Sample C Female 12.2
Sample D Female 17.7

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.1
68162257 Antisense, RP_041122_02_F02, Mouse strain C57BL/6J (56 days, male) 0.1

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The Human Protein Atlas

The Human Protein Atlas project is funded
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