MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:962.6 nTPM
HPA:962.6 nTPM
GTEx:830.4 nTPM
FANTOM5:218.6 Scaled Tags Per Million
Pig:213.0 nTPM
Mouse:1315.2 nTPM
Allen mouse:10.5 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 962.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 889.0
2019 Male, age 18, unknown 964.2
2586 Male, age 75, left hemisphere 946.0
1827 Male, age 72, unknown 940.5
2411 Female, age 72, unknown 934.7
2828 Female, age 72, unknown 901.6
2219 Male, age 76, both hemispheres 875.6
1833 Male, age 53, unknown 861.1
1870 Female, age 42, unknown 846.7
1830 Male, age 51, unknown 834.5
2666 Male, age 74, left hemisphere 785.0
Dorsal raphe nucleus
nTPM: 936.0
2298 Female, age 72, unknown 986.9
2047 Male, age 72, unknown 979.6
1828 Male, age 53, unknown 941.7
2750 Male, age 76, both hemispheres 898.0
2016 Female, age 72, unknown 873.9
Inferior colliculus
nTPM: 962.6
2097 Female, age 72, unknown 1009.9
1848 Female, age 42, unknown 988.7
2849 Male, age 72, unknown 940.9
1890 Male, age 53, unknown 911.0
Median raphe nucleus
nTPM: 900.3
2220 Male, age 76, midline 900.3
Pedunculopontine tegmental nucleus
nTPM: 954.7
1921 Female, age 85, both hemispheres 1050.7
2334 Male, age 80, both hemispheres 957.5
2338 Male, age 61, both hemispheres 856.0
Periaquaductal grey, anterior
nTPM: 844.7
2502 Female, age 75, unknown 860.2
1795 Male, age 51, unknown 849.2
1947 Male, age 18, unknown 824.7
Periaquaductal grey, dorsal
nTPM: 871.5
2464 Female, age 72, unknown 957.0
1840 Male, age 53, unknown 883.1
2850 Male, age 76, both hemispheres 843.6
1831 Male, age 72, unknown 802.0
Periaquaductal grey, lateral
nTPM: 819.7
2140 Male, age 76, both hemispheres 844.1
2053 Male, age 18, unknown 829.6
2272 Male, age 74, both hemispheres 785.2
Pretectal area
nTPM: 927.1
2007 Male, age 72, unknown 1083.8
1817 Female, age 42, unknown 1072.4
1944 Female, age 72, unknown 1026.2
1816 Male, age 51, unknown 990.4
2667 Female, age 75, unknown 950.3
1815 Male, age 53, unknown 914.4
2224 Female, age 72, unknown 896.6
2825 Male, age 18, unknown 863.0
2316 Male, age 76, right hemisphere 843.0
2273 Male, age 74, both hemispheres 811.1
2407 Male, age 75, both hemispheres 747.0
Red nucleus
nTPM: 902.8
1821 Female, age 72, unknown 1002.9
1954 Female, age 42, unknown 947.6
2588 Male, age 74, left hemisphere 935.7
2503 Female, age 72, unknown 935.3
2785 Male, age 18, unknown 928.4
2823 Male, age 76, right hemisphere 912.7
2227 Male, age 72, unknown 908.5
2769 Male, age 72, unknown 904.5
2725 Female, age 75, unknown 888.8
1865 Male, age 51, unknown 877.3
1904 Male, age 53, unknown 832.0
2584 Male, age 75, left hemisphere 759.8
Substantia nigra
nTPM: 887.8
1941 Male, age 53, unknown 1075.2
1889 Female, age 72, unknown 1003.2
2665 Male, age 74, both hemispheres 945.2
1916 Female, age 42, unknown 885.1
1851 Male, age 51, unknown 851.1
2590 Female, age 75, unknown 842.4
2241 Male, age 72, unknown 842.3
2583 Male, age 75, right hemisphere 821.4
2699 Male, age 18, unknown 815.8
2409 Female, age 72, unknown 796.7
Superior colliculus
nTPM: 863.1
2087 Female, age 72, unknown 966.9
1895 Male, age 76, right hemisphere 937.2
1839 Male, age 51, unknown 897.8
2261 Male, age 18, unknown 883.8
1796 Male, age 53, unknown 878.6
2668 Female, age 75, unknown 852.8
2587 Male, age 74, left hemisphere 833.5
2664 Male, age 75, both hemispheres 816.3
1913 Female, age 42, unknown 789.6
1995 Male, age 72, unknown 773.9
Ventral tegmental area
nTPM: 857.9
2410 Female, age 72, unknown 922.3
2218 Male, age 76, both hemispheres 881.0
1915 Female, age 42, unknown 858.8
1942 Male, age 51, unknown 846.1
2223 Female, age 72, unknown 841.2
2021 Male, age 53, unknown 798.1

MIDBRAIN - GTEx RNA-seqi
Average nTPM 830.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 830.4
Samples: 139

Max nTPM: 2219.6
Min nTPM: 197.9
Std nTPM: 341.9
Median nTPM: 769.7
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 2219.6
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 1720.5
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 1714.1
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 1663.7
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 1648.6
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 1628.3
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 1542.1
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 1483.0
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 1473.1
GTEX-14PJO-0011-R2a-SM-5ZZVF 60-69 years, male 1382.8
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 1342.5
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 218.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 218.6
FF:10158-103A5 76 years, female 218.6

MIDBRAIN - Pig RNA-seqi
Average nTPM 213.0
Pig sample Sample description nTPM
Midbrain
nTPM: 213.1
Samples: 4

Max nTPM: 292.7
Min nTPM: 161.0
Sample A Female 292.7
Sample B Female 175.8
Sample C Male 222.7
Sample D Male 161.0
Periaqueductal gray
nTPM: 164.9
Samples: 3

Max nTPM: 190.2
Min nTPM: 132.4
Sample B Female 172.1
Sample C Male 190.2
Sample D Male 132.4
Substantia nigra
nTPM: 163.3
Samples: 4

Max nTPM: 248.9
Min nTPM: 113.9
Sample A Female 248.9
Sample B Female 121.5
Sample C Male 168.7
Sample D Male 113.9
Superior colliculi
nTPM: 183.1
Samples: 4

Max nTPM: 240.8
Min nTPM: 57.8
Sample A Female 237.3
Sample B Female 57.8
Sample C Male 240.8
Sample D Male 196.4

MIDBRAIN - Mouse RNA-seqi
Average nTPM 1315.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 1315.2
Samples: 4

Max nTPM: 1439.3
Min nTPM: 1225.6
Sample A Male 1439.3
Sample B Male 1245.1
Sample C Female 1225.6
Sample D Female 1350.7

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 10.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 10.5
79556636 Antisense, RP_071204_01_A02, Mouse strain C57BL/6J (56 days, male) 13.9
275696 Antisense, RP_040617_01_C08, Mouse strain C57BL/6J (56 days, male) 13.0
73512352 Antisense, RP_050719_02_A05, Mouse strain C57BL/6J (56 days, male) 4.5
71022960 Antisense, RP_050719_02_A05, Mouse strain C57BL/6J (56 days, male) 3.9

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.