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TISSUE PRIMARY DATA RETINA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM ENDOMETRIUM
EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MEDULLA OBLONGATA MIDBRAIN NASOPHARYNX ORAL MUCOSA
OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PONS PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE SMOOTH MUSCLE
SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THALAMUS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA WHITE MATTER
ANTIBODIES
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VALIDATION
Dictionary
Tissue proteome
Eye
Retina
RETINA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:1183.1 nTPM
GTEx:1183.1 nTPM
FANTOM5:175.7 Scaled Tags Per Million
Pig:10.5 nTPM
Mouse:769.8 nTPM

RETINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 1183.1
GTEx sample id Sample description nTPM
Retina
Average nTPM: 1183.1
Samples: 105

Max nTPM: 2339.1
Min nTPM: 316.3
Std nTPM: 391.1
Median nTPM:
322_1 76 years, male 2339.1
386_1 76 years, male 2035.5
321_1 62 years, female 1999.5
316_1 62 years, male 1997.2
379_1 60 years, male 1917.7
319_1 81 years, male 1872.3
6_1 73 years, female 1829.2
318_1 68 years, male 1735.0
377_1 82 years, female 1733.6
172_1 72 years, female 1708.4
447_1 81 years, male 1672.6
153_1 70 years, female 1666.6
145_1 84 years, male 1662.6
376_1 75 years, female 1640.1
375_1 74 years, female 1615.7
237_1 82 years, male 1611.2
354_1 81 years, female 1549.9
404_1 82 years, female 1547.0
218_1 71 years, female 1543.1
320_1 89 years, female 1527.2
35_1 74 years, female 1516.2
163_1 78 years, male 1492.4
335_1 73 years, female 1490.7
286_1 68 years, female 1457.5
2_1 77 years, female 1445.6
243_1 75 years, male 1411.0
425_1 59 years, female 1394.6
480_1 63 years, male 1381.4
189_1 76 years, male 1366.7
394_1 75 years, female 1361.6
173_1 67 years, male 1360.7
384_1 83 years, male 1359.5
126_1 63 years, male 1357.2
307_1 66 years, female 1353.3
347_1 72 years, male 1349.7
293_1 68 years, female 1344.2
353_1 82 years, female 1337.1
355_1 70 years, female 1335.5
348_1 84 years, male 1332.7
405_1 91 years, male 1318.0
350_1 84 years, female 1309.5
506_1 65 years, male 1291.4
518_1 75 years, female 1272.9
406_1 79 years, male 1268.1
526_1 61 years, male 1267.7
115_1 83 years, male 1266.0
177_1 74 years, male 1265.9
229_1 69 years, female 1260.0
311_1 78 years, male 1234.8
352_1 62 years, male 1230.6
356_1 87 years, female 1223.7
291_1 76 years, male 1219.1
389_1 86 years, female 1194.6
251_1 78 years, male 1164.1
396_1 62 years, male 1164.0
246_1 77 years, male 1145.0
452_1 88 years, female 1139.6
351_1 91 years, male 1115.0
292_1 71 years, male 1104.2
4_1 88 years, female 1103.5
468_1 89 years, male 1081.8
295_1 61 years, female 1055.7
288_1 66 years, female 1048.4
81_1 67 years, male 1044.7
120_1 70 years, female 1025.3
349_1 83 years, male 1013.9
254_1 77 years, female 1011.8
17_1 71 years, male 1008.0
18_1 88 years, male 1004.2
109_1 81 years, female 994.9
43_1 64 years, female 994.3
41_1 94 years, female 978.2
139_1 64 years, female 970.8
324_1 76 years, male 969.5
217_1 76 years, male 964.2
264_1 73 years, female 934.6
517_1 88 years, male 934.3
142_1 61 years, female 914.4
137_1 83 years, male 894.2
314_1 67 years, male 894.2
9_1 66 years, female 889.9
499_1 55 years, female 882.4
317_1 60 years, male 869.5
503_1 68 years, male 842.9
266_1 85 years, male 839.6
99_1 64 years, male 836.0
119_1 70 years, female 834.1
315_1 62 years, female 810.4
265_1 87 years, male 777.8
117_1 61 years, male 765.4
495_1 57 years, female 764.1
313_1 79 years, female 755.2
42_1 85 years, male 754.3
415_1 77 years, female 745.7
32_1 67 years, male 710.7
162_1 79 years, female 708.8
501_1 88 years, male 683.1
466_1 57 years, female 576.0
414_1 84 years, female 562.5
413_1 59 years, female 537.3
149_1 88 years, male 534.0
89_1 63 years, male 512.0
308_1 70 years, female 426.5
491_1 89 years, female 344.4
490_1 67 years, female 316.3
Show allShow less

RETINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 175.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Retina
Scaled Tags Per Million: 175.7
FF:10030-101E3 24-65 years, mixed 175.7

RETINA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 10.5
Pig sample Sample description nTPM
Retina
nTPM: 10.5
Samples: 4

Max nTPM: 12.1
Min nTPM: 9.5
Sample A Female 9.5
Sample B Female 12.1
Sample C Male 10.5
Sample D Male 9.9

RETINA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 769.8
Mouse sample Sample description nTPM
Retina
nTPM: 769.9
Samples: 4

Max nTPM: 819.4
Min nTPM: 719.7
Sample A Male 819.4
Sample B Male 742.0
Sample C Female 798.4
Sample D Female 719.7

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