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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:554.8 nTPM
HPA:554.8 nTPM
GTEx:972.0 nTPM
FANTOM5:1879.4 Scaled Tags Per Million
Pig:556.1 nTPM
Mouse:2830.7 nTPM
Allen mouse:26.9 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max nTPM 554.8
Sample id Sample description nTPM
Amygdala
nTPM: 554.8
2514 Male, age 75, right hemisphere 692.1
1987 Female, age 91, left hemisphere 623.3
2517 Female, age 94, left hemisphere 558.5
2814 Male, age 76, right hemisphere 481.1
2695 Female, age 67, right hemisphere 419.2
Basal amygdala
nTPM: 501.8
2609 Male, age 75, right hemisphere 672.0
2243 Female, age 91, right hemisphere 579.7
2110 Male, age 80, left hemisphere 535.4
2685 Female, age 94, left hemisphere 499.7
1955 Male, age 76, both hemispheres 440.1
2827 Female, age 67, right hemisphere 284.0
Central amygdala
nTPM: 517.1
2515 Male, age 75, right hemisphere 562.2
2239 Male, age 80, left hemisphere 528.4
2701 Female, age 91, right hemisphere 520.7
2826 Female, age 94, left hemisphere 491.5
1905 Male, age 76, both hemispheres 482.5
Corticomedial amygdala
nTPM: 536.2
2829 Male, age 80, left hemisphere 643.3
2428 Male, age 75, right hemisphere 622.9
2242 Female, age 91, right hemisphere 622.2
2429 Female, age 94, left hemisphere 558.9
2240 Male, age 76, both hemispheres 429.8
2535 Female, age 67, right hemisphere 340.2
Lateral amygdala
nTPM: 457.3
2516 Male, age 75, right hemisphere 587.6
2255 Female, age 91, right hemisphere 512.8
1883 Male, age 76, both hemispheres 476.6
2534 Female, age 94, left hemisphere 458.6
2256 Male, age 80, left hemisphere 439.1
2830 Female, age 67, right hemisphere 269.0
Stria terminalis, bed nucleus
nTPM: 459.7
1974 Female, age 91, both hemispheres 473.2
2486 Female, age 94, both hemispheres 466.2
2201 Male, age 74, unknown 439.6

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 972.0
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 972.0
Samples: 152

Max nTPM: 2590.0
Min nTPM: 72.1
Std nTPM: 495.1
Median nTPM: 892.7
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 2590.0
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 2504.5
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 2339.0
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 2303.3
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 1985.8
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 1957.1
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 1890.2
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 1867.0
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 1839.8
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 1765.1
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 1650.9
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 1648.0
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 1630.1
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 1602.5
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 1596.5
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 1577.3
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 1550.6
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 1532.8
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 1527.8
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 1509.9
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 1495.8
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 1494.7
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 1493.8
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 1449.8
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 1440.9
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 1425.4
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 1417.9
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 1395.6
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 1392.8
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 1388.2
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 1385.5
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 1381.1
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 1379.1
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 1365.0
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 1356.2
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 1345.4
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 1329.7
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 1329.1
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 1317.2
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 1292.5
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 1267.0
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 1266.5
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 1253.7
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 1215.6
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 1207.8
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 1199.2
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 1195.5
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 1191.9
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 1191.6
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 1184.3
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 1171.6
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 1134.6
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 1133.2
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 1129.6
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 1124.9
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 1114.6
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 1112.4
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 1103.3
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 1093.1
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 1090.3
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 1081.6
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 1076.6
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 1064.4
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 1060.4
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 1060.3
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 1054.8
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 1018.1
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 1017.6
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 1001.4
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 984.3
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 978.2
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 934.5
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 929.7
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 915.6
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 915.0
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 897.8
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 887.6
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 880.2
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 871.5
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 853.8
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 853.4
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 849.6
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 822.5
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 819.6
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 819.2
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 815.6
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 808.9
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 801.9
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 794.4
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 776.2
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 776.0
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 772.9
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 764.1
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 750.6
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 750.0
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 742.6
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 738.8
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 737.7
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 736.7
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 722.7
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 717.2
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 717.2
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 716.2
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 702.4
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 687.3
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 666.1
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 661.4
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 645.9
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 644.2
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 637.4
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 620.7
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 617.8
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 608.7
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 607.6
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 596.8
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 594.7
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 591.3
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 585.8
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 583.7
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 572.0
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 570.8
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 561.2
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 554.7
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 540.9
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 514.0
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 503.1
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 490.0
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 475.7
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 458.5
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 453.7
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 442.3
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 440.9
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 414.1
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 402.2
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 390.5
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 369.3
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 355.0
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 350.7
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 331.4
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 315.4
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 307.3
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 286.9
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 286.2
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 271.3
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 268.9
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 265.4
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 259.5
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 242.6
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 190.6
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 187.5
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 128.6
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 72.1
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 1879.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 1879.4
FF:10151-102I7 76 years, female 1879.4

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 556.1
Pig sample Sample description nTPM
Amygdala
nTPM: 556.2
Samples: 4

Max nTPM: 651.0
Min nTPM: 518.7
Sample A Female 651.0
Sample B Female 530.6
Sample C Male 518.7
Sample D Male 524.3

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 2830.7
Mouse sample Sample description nTPM
Amygdala
nTPM: 2830.7
Samples: 4

Max nTPM: 3008.7
Min nTPM: 2608.3
Sample A Male 2608.3
Sample B Male 2755.2
Sample C Female 3008.7
Sample D Female 2950.5

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 26.9
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 26.9
1692 Antisense, RP_Baylor_102700, Mouse strain C57BL/6J (56 days, male) 26.9
1691 Antisense, RP_Baylor_102700, Mouse strain C57BL/6J (56 days, male) 20.4

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