MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:494.2 nTPM
HPA:494.2 nTPM
GTEx:456.2 nTPM
FANTOM5:615.2 Scaled Tags Per Million
Pig:656.1 nTPM
Mouse:2567.3 nTPM
Allen mouse:17.7 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 494.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 415.6
2828 Female, age 72, unknown 507.8
1827 Male, age 72, unknown 455.5
2219 Male, age 76, both hemispheres 447.1
2586 Male, age 75, left hemisphere 444.9
1870 Female, age 42, unknown 430.2
2019 Male, age 18, unknown 390.2
2411 Female, age 72, unknown 384.2
1833 Male, age 53, unknown 383.6
1830 Male, age 51, unknown 360.8
2666 Male, age 74, left hemisphere 351.7
Dorsal raphe nucleus
nTPM: 450.8
2298 Female, age 72, unknown 492.4
2016 Female, age 72, unknown 487.8
2047 Male, age 72, unknown 445.5
1828 Male, age 53, unknown 444.3
2750 Male, age 76, both hemispheres 384.2
Inferior colliculus
nTPM: 444.4
2097 Female, age 72, unknown 468.4
1848 Female, age 42, unknown 458.4
1890 Male, age 53, unknown 427.2
2849 Male, age 72, unknown 423.5
Median raphe nucleus
nTPM: 423.5
2220 Male, age 76, midline 423.5
Pedunculopontine tegmental nucleus
nTPM: 394.1
1921 Female, age 85, both hemispheres 469.7
2334 Male, age 80, both hemispheres 397.4
2338 Male, age 61, both hemispheres 315.3
Periaquaductal grey, anterior
nTPM: 442.6
1795 Male, age 51, unknown 486.4
1947 Male, age 18, unknown 432.5
2502 Female, age 75, unknown 408.8
Periaquaductal grey, dorsal
nTPM: 479.8
1840 Male, age 53, unknown 511.9
2850 Male, age 76, both hemispheres 491.9
1831 Male, age 72, unknown 487.4
2464 Female, age 72, unknown 428.2
Periaquaductal grey, lateral
nTPM: 475.6
2053 Male, age 18, unknown 502.3
2272 Male, age 74, both hemispheres 470.3
2140 Male, age 76, both hemispheres 454.3
Pretectal area
nTPM: 494.2
2273 Male, age 74, both hemispheres 590.6
2667 Female, age 75, unknown 555.6
1944 Female, age 72, unknown 554.4
2224 Female, age 72, unknown 512.9
1817 Female, age 42, unknown 503.2
1816 Male, age 51, unknown 494.1
1815 Male, age 53, unknown 477.0
2825 Male, age 18, unknown 455.1
2007 Male, age 72, unknown 442.9
2407 Male, age 75, both hemispheres 434.0
2316 Male, age 76, right hemisphere 416.5
Red nucleus
nTPM: 382.0
2725 Female, age 75, unknown 441.9
1821 Female, age 72, unknown 423.7
2503 Female, age 72, unknown 420.0
2769 Male, age 72, unknown 383.8
2227 Male, age 72, unknown 378.6
2785 Male, age 18, unknown 378.5
1954 Female, age 42, unknown 377.0
1865 Male, age 51, unknown 373.9
1904 Male, age 53, unknown 372.2
2823 Male, age 76, right hemisphere 369.8
2588 Male, age 74, left hemisphere 350.3
2584 Male, age 75, left hemisphere 314.9
Substantia nigra
nTPM: 445.6
1916 Female, age 42, unknown 541.5
1889 Female, age 72, unknown 482.3
1851 Male, age 51, unknown 475.5
2699 Male, age 18, unknown 474.1
2409 Female, age 72, unknown 447.5
1941 Male, age 53, unknown 438.7
2241 Male, age 72, unknown 431.0
2590 Female, age 75, unknown 392.5
2665 Male, age 74, both hemispheres 388.2
2583 Male, age 75, right hemisphere 384.5
Superior colliculus
nTPM: 442.9
2087 Female, age 72, unknown 513.1
1796 Male, age 53, unknown 486.1
1995 Male, age 72, unknown 457.7
2261 Male, age 18, unknown 451.7
2664 Male, age 75, both hemispheres 437.3
1839 Male, age 51, unknown 426.7
1913 Female, age 42, unknown 425.3
2587 Male, age 74, left hemisphere 418.4
2668 Female, age 75, unknown 409.3
1895 Male, age 76, right hemisphere 403.4
Ventral tegmental area
nTPM: 442.3
1915 Female, age 42, unknown 474.1
1942 Male, age 51, unknown 449.5
2410 Female, age 72, unknown 448.4
2021 Male, age 53, unknown 447.7
2218 Male, age 76, both hemispheres 437.6
2223 Female, age 72, unknown 396.6

MIDBRAIN - GTEx RNA-seqi
Average nTPM 456.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 456.2
Samples: 139

Max nTPM: 1414.5
Min nTPM: 89.5
Std nTPM: 221.3
Median nTPM: 428.3
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 1414.5
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 1206.8
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 1202.8
GTEX-11GSP-0011-R2b-SM-9QEGE 60-69 years, female 1001.6
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 988.5
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 939.5
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 880.0
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 869.3
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 804.2
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 791.4
GTEX-1B996-0011-R2a-SM-7IGON 60-69 years, male 787.6
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 615.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 615.2
FF:10158-103A5 76 years, female 615.2

MIDBRAIN - Pig RNA-seqi
Average nTPM 656.1
Pig sample Sample description nTPM
Midbrain
nTPM: 631.8
Samples: 4

Max nTPM: 734.2
Min nTPM: 506.7
Sample A Female 734.2
Sample B Female 680.2
Sample C Male 606.1
Sample D Male 506.7
Periaqueductal gray
nTPM: 656.1
Samples: 3

Max nTPM: 757.4
Min nTPM: 544.1
Sample B Female 757.4
Sample C Male 666.9
Sample D Male 544.1
Substantia nigra
nTPM: 613.4
Samples: 4

Max nTPM: 661.9
Min nTPM: 537.8
Sample A Female 661.9
Sample B Female 537.8
Sample C Male 631.9
Sample D Male 622.0
Superior colliculi
nTPM: 501.3
Samples: 4

Max nTPM: 587.9
Min nTPM: 329.6
Sample A Female 587.9
Sample B Female 329.6
Sample C Male 553.3
Sample D Male 534.5

MIDBRAIN - Mouse RNA-seqi
Average nTPM 2567.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 2567.4
Samples: 4

Max nTPM: 2699.2
Min nTPM: 2418.0
Sample A Male 2605.7
Sample B Male 2418.0
Sample C Female 2699.2
Sample D Female 2546.5

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 17.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 17.7
1692 Antisense, RP_Baylor_102700, Mouse strain C57BL/6J (56 days, male) 17.7
1691 Antisense, RP_Baylor_102700, Mouse strain C57BL/6J (56 days, male) 9.5

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.