We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
CPE
SECTIONS
  • TISSUE
  • BRAIN
  • SINGLE CELL TYPE
  • TISSUE CELL TYPE
  • PATHOLOGY
  • DISEASE
  • IMMUNE CELL
  • BLOOD PROTEIN
  • SUBCELLULAR
  • CELL LINE
  • STRUCTURE
  • METABOLIC
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ANTIBODY SUBMISSION
  • ANTIBODY AVAILABILITY
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
  • SARS-COV-2
HELP
  • ANTIBODY VALIDATION
  • ASSAYS & ANNOTATION
  • DISCLAIMER
  • HELP & FAQ
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Class
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Patient ID
Tissue
Category
Cluster
Reliability
Brain region
Category
Brain region
Category
Brain region
Category
Reliability
Cell type
Category
Cluster
Tissue
Cell type
Enrichment
Cancer
Prognosis
Cancer
Category
Cell type
Category
Cell lineage
Category
Cluster
Annotation
Disease
Location
Searches
Location
Cell line
Type
Phase
Reliability
Cancer type
Category
Cluster
Pathway
Category
Score
Score
Score
Validation
Validation
Validation
Validation
Antibodies
Protein structure
In atlas
Column


  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • TISSUE CELL

  • PATHOLOGY

  • DISEASE

  • IMMUNE

  • BLOOD

  • SUBCELL

  • CELL LINE

  • STRUCTURE

  • METABOLIC

  • CPE
BRAIN MEDULLA OBLONGATA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Medulla oblongata
MEDULLA OBLONGATA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:417.0 nTPM
HPA:417.0 nTPM
FANTOM5:765.9 Scaled Tags Per Million
Pig:552.1 nTPM
Allen mouse:13.8 Expression energy

MEDULLA OBLONGATA - HPA Brain RNA-seq
Max nTPM 417.0
Sample id Sample description nTPM
Area postrema
nTPM: 400.8
2799 Male, age 61, both hemispheres 445.0
2054 Male, age 76, both hemispheres 411.4
2306 Male, age 80, both hemispheres 346.1
Cuneate nuclei
nTPM: 332.0
2131 Male, age 76, both hemispheres 354.1
2376 Male, age 61, both hemispheres 341.2
2381 Male, age 80, both hemispheres 300.7
Dorsal medullary reticular nucleus
nTPM: 369.9
2040 Female, age 85, both hemispheres 405.5
2373 Male, age 61, both hemispheres 354.6
2088 Male, age 76, both hemispheres 349.6
Dorsal motor vagal complex
nTPM: 397.4
2000 Male, age 74, unknown 454.2
2797 Male, age 61, both hemispheres 450.2
2813 Female, age 72, unknown 447.9
2844 Male, age 55, unknown 441.1
2133 Female, age 91, both hemispheres 386.0
2185 Male, age 76, both hemispheres 375.9
2643 Male, age 74, both hemispheres 334.6
2807 Female, age 85, both hemispheres 289.4
Gigantocellular reticular nuclei, medullary
nTPM: 352.4
1876 Female, age 85, both hemispheres 414.3
2022 Male, age 76, right hemisphere 365.3
2462 Male, age 74, both hemispheres 360.9
2314 Male, age 61, both hemispheres 355.5
2387 Female, age 91, both hemispheres 329.6
2310 Male, age 80, both hemispheres 288.7
Gigantocellular reticular nuclei, pars
nTPM: 342.6
2084 Female, age 85, both hemispheres 403.8
2168 Male, age 76, both hemispheres 372.4
2336 Male, age 61, both hemispheres 349.8
2706 Male, age 80, both hemispheres 298.0
2330 Male, age 80, both hemispheres 289.0
Inferior olive
nTPM: 417.0
2563 Male, age 74, both hemispheres 494.0
2085 Female, age 85, both hemispheres 479.6
2178 Male, age 61, both hemispheres 379.7
2379 Male, age 80, both hemispheres 368.3
2628 Female, age 91, both hemispheres 363.5
Lateral medullary reticular nucleus
nTPM: 394.1
2804 Female, age 91, both hemispheres 429.2
2305 Male, age 74, both hemispheres 401.1
2044 Male, age 76, both hemispheres 397.3
2190 Female, age 85, both hemispheres 388.9
2374 Male, age 61, both hemispheres 384.6
2852 Male, age 80, both hemispheres 363.3
Medial vestibular nucleus
nTPM: 382.5
2743 Female, age 85, both hemispheres 404.7
2801 Male, age 74, both hemispheres 395.9
2134 Male, age 76, both hemispheres 390.7
2803 Female, age 91, both hemispheres 376.7
2093 Male, age 80, both hemispheres 371.0
2624 Male, age 61, both hemispheres 356.0
Motor hypoglossal nucleus
nTPM: 359.4
2461 Male, age 61, both hemispheres 410.0
2277 Male, age 76, both hemispheres 403.2
2125 Female, age 91, both hemispheres 370.0
2132 Female, age 85, both hemispheres 317.9
2182 Male, age 80, both hemispheres 295.8
Nucleus ambiguus
nTPM: 369.3
2071 Male, age 76, both hemispheres 421.7
2096 Female, age 85, both hemispheres 316.9
Nucleus cuneatus
nTPM: 349.0
2562 Male, age 61, both hemispheres 407.3
2564 Male, age 74, both hemispheres 402.6
2100 Male, age 76, both hemispheres 340.0
2380 Male, age 80, both hemispheres 328.4
2808 Female, age 85, both hemispheres 318.6
2805 Female, age 91, both hemispheres 297.1
Nucleus gracilis
nTPM: 328.3
2627 Male, age 74, both hemispheres 436.8
2299 Female, age 85, both hemispheres 280.9
2382 Male, age 80, both hemispheres 267.3
Nucleus raphe magnus
nTPM: 335.6
2455 Male, age 74, both hemispheres 375.1
2160 Male, age 61, both hemispheres 359.1
2051 Male, age 76, both hemispheres 352.9
2172 Female, age 85, both hemispheres 322.6
2328 Male, age 80, both hemispheres 310.9
2459 Female, age 91, both hemispheres 292.8
Nucleus raphe obscurus
nTPM: 362.6
2142 Male, age 76, midline 377.6
2845 Female, age 85, midline 362.9
2800 Male, age 61, midline 347.2
Nucleus raphe pallidus
nTPM: 359.5
2145 Male, age 76, midline 364.5
2183 Male, age 80, midline 362.1
1924 Male, age 61, midline 351.9
Nucleus tractus solitarii
nTPM: 386.5
2144 Female, age 91, right hemisphere 485.7
2656 Male, age 76, both hemispheres 440.4
2191 Female, age 85, both hemispheres 314.6
2307 Male, age 80, both hemispheres 305.4
Parvicellular reticular nuclei
nTPM: 341.8
2119 Male, age 80, both hemispheres 393.4
2095 Male, age 76, both hemispheres 357.8
2558 Male, age 74, both hemispheres 274.2
Parvicellular reticular nuclei, medullary
nTPM: 367.2
2091 Female, age 85, both hemispheres 382.8
2189 Female, age 91, both hemispheres 377.6
2181 Male, age 80, left hemisphere 341.2
Peritrigeminal nucleus
nTPM: 401.4
2067 Female, age 85, both hemispheres 418.7
2136 Male, age 76, both hemispheres 404.2
2179 Male, age 61, both hemispheres 381.3
Prepositus hypoglossal nucleus
nTPM: 382.4
2855 Female, age 85, right hemisphere 383.5
2086 Male, age 80, both hemispheres 381.2
Spinal trigeminal nucleus, caudal
nTPM: 342.5
2447 Male, age 76, both hemispheres 359.2
2642 Male, age 74, both hemispheres 349.4
2390 Female, age 91, both hemispheres 349.1
2312 Male, age 61, both hemispheres 327.9
2308 Male, age 80, both hemispheres 326.9
Spinal trigeminal nucleus, interpolar
nTPM: 379.1
2066 Male, age 76, right hemisphere 408.5
2625 Male, age 61, both hemispheres 404.5
2386 Female, age 85, both hemispheres 371.1
2033 Male, age 80, both hemispheres 363.1
2389 Female, age 91, both hemispheres 348.5
Spinal vestibular nucleus
nTPM: 358.4
2806 Female, age 85, both hemispheres 394.3
2186 Female, age 91, both hemispheres 371.6
2796 Male, age 61, both hemispheres 361.7
2748 Male, age 76, both hemispheres 361.4
2780 Male, age 80, both hemispheres 357.5
2384 Male, age 74, both hemispheres 303.9
Ventral medullary reticular nucleus
nTPM: 378.1
2372 Male, age 61, both hemispheres 387.2
2060 Male, age 76, both hemispheres 369.1
Ventrolateral medulla, A1-C1 cell groups
nTPM: 375.3
1986 Male, age 76, both hemispheres 405.0
2302 Female, age 91, both hemispheres 394.1
2741 Female, age 85, both hemispheres 388.5
2180 Male, age 61, both hemispheres 373.6
2118 Male, age 80, both hemispheres 315.4

MEDULLA OBLONGATA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 765.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Medulla oblongata
Scaled Tags Per Million: 765.9
FF:10155-103A2 76 years, female 976.9
FF:10038-101F2 18-64 years, mixed 684.2
FF:10174-103C3 60 years, female 636.6

MEDULLA OBLONGATA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 552.1
Pig sample Sample description nTPM
Medulla oblongata
nTPM: 552.1
Samples: 4

Max nTPM: 697.2
Min nTPM: 455.6
Sample A Female 455.6
Sample B Female 697.2
Sample C Male 593.9
Sample D Male 461.7

MEDULLA OBLONGATA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 13.8
Allen experiment id Experiment description Expression energy
Medulla oblongata
Expression energy: 13.8
1692 Antisense, RP_Baylor_102700, Mouse strain C57BL/6J (56 days, male) 13.8
1691 Antisense, RP_Baylor_102700, Mouse strain C57BL/6J (56 days, male) 10.3

Contact

  • NEWS ARTICLES
  • PRESS ROOM
  • contact@proteinatlas.org

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.