MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:96.1 nTPM
HPA:96.1 nTPM
GTEx:57.2 nTPM
FANTOM5:368.1 Scaled Tags Per Million
Pig:70.4 nTPM
Mouse:67.0 nTPM
Allen mouse:11.8 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 96.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 39.8
2019 Male, age 18, unknown 61.7
2828 Female, age 72, unknown 57.6
1827 Male, age 72, unknown 55.3
2586 Male, age 75, left hemisphere 50.6
1870 Female, age 42, unknown 42.5
1833 Male, age 53, unknown 37.3
1830 Male, age 51, unknown 33.7
2411 Female, age 72, unknown 33.6
2666 Male, age 74, left hemisphere 22.8
2219 Male, age 76, both hemispheres 2.8
Dorsal raphe nucleus
nTPM: 57.1
2047 Male, age 72, unknown 71.5
2298 Female, age 72, unknown 61.7
1828 Male, age 53, unknown 61.4
2016 Female, age 72, unknown 46.7
2750 Male, age 76, both hemispheres 44.1
Inferior colliculus
nTPM: 55.3
1890 Male, age 53, unknown 59.4
2097 Female, age 72, unknown 57.1
1848 Female, age 42, unknown 52.7
2849 Male, age 72, unknown 52.2
Median raphe nucleus
nTPM: 83.1
2220 Male, age 76, midline 83.1
Pedunculopontine tegmental nucleus
nTPM: 96.1
2338 Male, age 61, both hemispheres 190.0
2334 Male, age 80, both hemispheres 61.9
1921 Female, age 85, both hemispheres 36.5
Periaquaductal grey, anterior
nTPM: 60.4
1795 Male, age 51, unknown 64.7
2502 Female, age 75, unknown 61.6
1947 Male, age 18, unknown 54.8
Periaquaductal grey, dorsal
nTPM: 58.7
2850 Male, age 76, both hemispheres 103.2
1840 Male, age 53, unknown 57.7
1831 Male, age 72, unknown 41.8
2464 Female, age 72, unknown 32.2
Periaquaductal grey, lateral
nTPM: 83.2
2140 Male, age 76, both hemispheres 127.2
2272 Male, age 74, both hemispheres 71.7
2053 Male, age 18, unknown 50.6
Pretectal area
nTPM: 69.3
2407 Male, age 75, both hemispheres 146.3
1944 Female, age 72, unknown 78.0
1816 Male, age 51, unknown 77.6
2007 Male, age 72, unknown 73.6
2316 Male, age 76, right hemisphere 73.6
1817 Female, age 42, unknown 62.8
2273 Male, age 74, both hemispheres 59.9
2667 Female, age 75, unknown 56.7
2224 Female, age 72, unknown 48.3
2825 Male, age 18, unknown 45.4
1815 Male, age 53, unknown 40.2
Red nucleus
nTPM: 44.7
2725 Female, age 75, unknown 74.0
2785 Male, age 18, unknown 56.7
1821 Female, age 72, unknown 48.1
2227 Male, age 72, unknown 47.8
2823 Male, age 76, right hemisphere 47.7
2769 Male, age 72, unknown 46.9
2503 Female, age 72, unknown 43.3
1954 Female, age 42, unknown 42.3
1904 Male, age 53, unknown 37.6
1865 Male, age 51, unknown 34.3
2584 Male, age 75, left hemisphere 29.4
2588 Male, age 74, left hemisphere 28.4
Substantia nigra
nTPM: 59.1
1916 Female, age 42, unknown 96.6
1851 Male, age 51, unknown 73.9
1941 Male, age 53, unknown 69.0
1889 Female, age 72, unknown 65.8
2409 Female, age 72, unknown 59.8
2699 Male, age 18, unknown 54.8
2590 Female, age 75, unknown 48.7
2241 Male, age 72, unknown 46.2
2665 Male, age 74, both hemispheres 38.9
2583 Male, age 75, right hemisphere 37.5
Superior colliculus
nTPM: 50.9
2664 Male, age 75, both hemispheres 84.0
2087 Female, age 72, unknown 69.2
2261 Male, age 18, unknown 68.0
1796 Male, age 53, unknown 67.7
2587 Male, age 74, left hemisphere 43.3
2668 Female, age 75, unknown 39.2
1839 Male, age 51, unknown 36.4
1995 Male, age 72, unknown 35.4
1913 Female, age 42, unknown 34.2
1895 Male, age 76, right hemisphere 31.8
Ventral tegmental area
nTPM: 56.5
1915 Female, age 42, unknown 75.6
2218 Male, age 76, both hemispheres 61.3
1942 Male, age 51, unknown 59.4
2021 Male, age 53, unknown 52.7
2410 Female, age 72, unknown 48.8
2223 Female, age 72, unknown 41.3

MIDBRAIN - GTEx RNA-seqi
Average nTPM 57.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 57.2
Samples: 139

Max nTPM: 454.7
Min nTPM: 16.3
Std nTPM: 56.9
Median nTPM: 38.1
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 454.7
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 300.0
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 253.4
GTEX-132Q8-0011-R2b-SM-5EQ5Z 60-69 years, male 187.3
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 183.0
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 166.2
GTEX-1B996-0011-R2a-SM-7IGON 60-69 years, male 165.9
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 163.2
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 161.3
GTEX-1B8SG-0011-R2b-SM-79OOT 50-59 years, male 155.3
GTEX-1F48J-0011-R2a-SM-CL535 50-59 years, female 146.4
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 368.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 368.1
FF:10158-103A5 76 years, female 368.1

MIDBRAIN - Pig RNA-seqi
Average nTPM 70.4
Pig sample Sample description nTPM
Midbrain
nTPM: 57.5
Samples: 4

Max nTPM: 67.0
Min nTPM: 49.4
Sample A Female 51.9
Sample B Female 49.4
Sample C Male 61.5
Sample D Male 67.0
Periaqueductal gray
nTPM: 48.0
Samples: 3

Max nTPM: 52.6
Min nTPM: 41.9
Sample B Female 49.4
Sample C Male 52.6
Sample D Male 41.9
Substantia nigra
nTPM: 57.3
Samples: 4

Max nTPM: 81.4
Min nTPM: 36.0
Sample A Female 81.4
Sample B Female 44.9
Sample C Male 67.0
Sample D Male 36.0
Superior colliculi
nTPM: 70.5
Samples: 4

Max nTPM: 86.6
Min nTPM: 54.3
Sample A Female 86.6
Sample B Female 54.3
Sample C Male 80.8
Sample D Male 60.1

MIDBRAIN - Mouse RNA-seqi
Average nTPM 67.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 67.0
Samples: 4

Max nTPM: 72.8
Min nTPM: 62.0
Sample A Male 62.0
Sample B Male 69.0
Sample C Female 72.8
Sample D Female 64.1

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 11.8
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 11.8
634450 Antisense, RP_040907_02_H11, Mouse strain C57BL/6J (56 days, male) 11.8

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.