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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:1393.3 nTPM
HPA:1393.3 nTPM
GTEx:1375.9 nTPM
FANTOM5:348.1 Scaled Tags Per Million
Pig:223.5 nTPM

AMYGDALA - HPA Brain RNA-seq
Max nTPM 1393.3
Sample id Sample description nTPM
Amygdala
nTPM: 1393.3
2695 Female, age 67, right hemisphere 1462.0
2814 Male, age 76, right hemisphere 1405.7
2514 Male, age 75, right hemisphere 1375.7
2517 Female, age 94, left hemisphere 1363.1
1987 Female, age 91, left hemisphere 1360.0
Basal amygdala
nTPM: 1350.4
2827 Female, age 67, right hemisphere 1420.5
2609 Male, age 75, right hemisphere 1353.0
2110 Male, age 80, left hemisphere 1349.4
2685 Female, age 94, left hemisphere 1345.9
1955 Male, age 76, both hemispheres 1333.2
2243 Female, age 91, right hemisphere 1300.5
Central amygdala
nTPM: 1377.4
2826 Female, age 94, left hemisphere 1482.0
2515 Male, age 75, right hemisphere 1380.2
1905 Male, age 76, both hemispheres 1379.8
2239 Male, age 80, left hemisphere 1330.7
2701 Female, age 91, right hemisphere 1314.2
Corticomedial amygdala
nTPM: 1335.6
2535 Female, age 67, right hemisphere 1359.1
2428 Male, age 75, right hemisphere 1356.2
2829 Male, age 80, left hemisphere 1343.4
2429 Female, age 94, left hemisphere 1327.2
2240 Male, age 76, both hemispheres 1322.4
2242 Female, age 91, right hemisphere 1305.5
Lateral amygdala
nTPM: 1387.0
2830 Female, age 67, right hemisphere 1492.3
2516 Male, age 75, right hemisphere 1409.6
2534 Female, age 94, left hemisphere 1408.4
2256 Male, age 80, left hemisphere 1356.4
1883 Male, age 76, both hemispheres 1346.2
2255 Female, age 91, right hemisphere 1309.3
Stria terminalis, bed nucleus
nTPM: 1313.5
1974 Female, age 91, both hemispheres 1342.5
2201 Male, age 74, unknown 1306.8
2486 Female, age 94, both hemispheres 1291.2

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 1375.9
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 1375.9
Samples: 152

Max nTPM: 4445.2
Min nTPM: 591.5
Std nTPM: 685.1
Median nTPM: 1160.1
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 4445.2
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 4242.2
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 4150.9
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 3344.8
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 3235.6
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 2887.4
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 2839.3
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 2775.5
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 2693.5
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 2608.2
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 2506.1
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 2447.5
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 2301.1
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 2259.9
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 2229.9
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 2161.1
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 2154.8
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 2125.6
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 2086.0
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 2071.1
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 2056.5
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 2030.1
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 1976.5
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 1971.1
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 1885.5
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 1881.1
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 1881.0
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 1875.8
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 1863.2
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 1797.4
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 1722.6
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 1718.9
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 1681.6
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 1652.5
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 1620.3
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 1620.2
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 1590.8
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 1589.7
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 1575.1
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 1539.5
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 1506.4
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 1499.7
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 1486.4
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 1471.0
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 1470.3
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 1461.2
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 1459.5
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 1451.5
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 1431.7
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 1426.5
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 1420.7
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 1388.2
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 1372.3
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 1359.8
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 1345.7
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 1341.4
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 1330.3
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 1330.0
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 1329.9
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 1321.6
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 1292.4
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 1276.8
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 1274.1
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 1268.1
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 1247.6
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 1247.4
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 1236.3
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 1218.7
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 1208.9
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 1197.9
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 1195.9
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 1195.3
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 1191.6
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 1186.6
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 1166.4
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 1165.1
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 1155.2
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 1144.3
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 1144.2
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 1143.3
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 1143.3
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 1139.1
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 1124.9
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 1123.8
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 1120.8
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 1117.2
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 1108.6
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 1108.4
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 1100.5
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 1098.5
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 1086.6
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 1083.4
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 1077.6
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 1072.5
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 1058.5
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 1058.5
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 1056.3
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 1054.4
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 1049.7
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 1030.5
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 1025.8
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 1009.2
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 986.2
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 983.0
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 980.4
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 977.3
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 976.5
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 973.5
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 971.8
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 967.1
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 949.7
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 947.5
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 944.5
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 940.7
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 923.7
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 910.0
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 908.0
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 903.1
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 899.8
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 893.1
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 886.1
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 885.9
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 883.9
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 877.4
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 871.7
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 869.0
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 862.3
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 844.7
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 830.5
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 830.1
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 829.0
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 826.5
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 824.5
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 822.7
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 822.2
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 817.9
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 810.9
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 809.4
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 796.0
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 733.6
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 729.1
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 715.7
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 714.2
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 702.7
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 683.6
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 670.5
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 667.4
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 666.5
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 662.5
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 647.5
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 614.8
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 591.5
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 348.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 348.1
FF:10151-102I7 76 years, female 348.1

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 223.5
Pig sample Sample description nTPM
Amygdala
nTPM: 223.5
Samples: 4

Max nTPM: 283.2
Min nTPM: 137.6
Sample A Female 242.7
Sample B Female 283.2
Sample C Male 230.6
Sample D Male 137.6

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