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RPS12
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BRAIN PONS Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Pons
PONS - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

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No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
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Consensus:1443.1 nTPM
HPA:1443.1 nTPM
FANTOM5:407.2 Scaled Tags Per Million
Pig:349.8 nTPM

PONS - HPA Brain RNA-seq
Max nTPM 1443.1
Sample id Sample description nTPM
Anterior cochlear nucleus, ventral
nTPM: 1402.0
2188 Female, age 91, both hemispheres 1452.1
2090 Male, age 80, both hemispheres 1433.5
2301 Female, age 85, both hemispheres 1370.4
1984 Male, age 76, both hemispheres 1352.2
Dorsal cochlear nucleus
nTPM: 1413.5
2802 Male, age 74, right hemisphere 1448.6
2187 Female, age 91, both hemispheres 1429.8
2370 Male, age 61, both hemispheres 1426.1
2378 Male, age 80, both hemispheres 1417.5
2058 Male, age 76, both hemispheres 1345.3
Dorsal tegmental nucleus
nTPM: 1399.1
2326 Male, age 74, both hemispheres 1428.1
2083 Male, age 80, both hemispheres 1424.7
2358 Male, age 61, both hemispheres 1383.2
1936 Male, age 76, left hemisphere 1360.3
Dorsolateral tegmental area
nTPM: 1393.2
2654 Male, age 80, both hemispheres 1437.8
2751 Female, age 85, both hemispheres 1403.9
2337 Male, age 61, both hemispheres 1398.6
2360 Male, age 74, both hemispheres 1385.8
2141 Male, age 76, both hemispheres 1339.7
Kolliker-Fuse nucleus
nTPM: 1391.7
2793 Female, age 91, left hemisphere 1399.9
2315 Male, age 76, right hemisphere 1397.9
2163 Male, age 80, both hemispheres 1377.1
Lateral lemniscal nuclei
nTPM: 1348.7
2453 Male, age 74, right hemisphere 1362.9
2320 Female, age 91, left hemisphere 1352.3
2746 Female, age 85, left hemisphere 1350.0
2169 Male, age 76, both hemispheres 1346.5
2036 Male, age 80, both hemispheres 1332.1
Lateral parabrachial nucleus
nTPM: 1397.1
2792 Male, age 76, both hemispheres 1440.3
2013 Male, age 80, both hemispheres 1411.5
2790 Male, age 61, both hemispheres 1370.6
2139 Female, age 85, right hemisphere 1365.9
Lateral vestibular nucleus
nTPM: 1372.1
2311 Male, age 80, both hemispheres 1405.9
2184 Male, age 76, both hemispheres 1338.2
Locus coeruleus
nTPM: 1350.3
2720 Male, age 74, both hemispheres 1374.1
2162 Male, age 80, both hemispheres 1369.0
2123 Female, age 91, both hemispheres 1358.0
2317 Female, age 72, unknown 1356.2
2014 Male, age 55, unknown 1341.1
1980 Male, age 76, both hemispheres 1328.6
2788 Male, age 74, unknown 1325.1
Medial olivary nucleus
nTPM: 1443.1
1943 Male, age 61, both hemispheres 1464.4
1962 Male, age 76, both hemispheres 1462.9
2138 Female, age 91, both hemispheres 1429.2
2851 Male, age 80, both hemispheres 1415.9
Medial parabrachial nucleus
nTPM: 1388.0
2170 Female, age 91, both hemispheres 1465.9
2854 Male, age 80, both hemispheres 1381.2
2463 Female, age 85, right hemisphere 1379.2
2156 Male, age 61, both hemispheres 1363.3
2786 Male, age 76, both hemispheres 1350.2
Medial periolivary nuclei
nTPM: 1359.3
2458 Female, age 91, both hemispheres 1379.9
2081 Male, age 80, both hemispheres 1376.3
2791 Male, age 74, right hemisphere 1361.0
2063 Male, age 76, both hemispheres 1359.2
2171 Female, age 85, both hemispheres 1320.0
Motor facial nucleus
nTPM: 1358.4
2795 Female, age 91, both hemispheres 1381.2
2126 Male, age 61, both hemispheres 1380.8
2365 Male, age 74, right hemisphere 1370.1
2697 Female, age 85, both hemispheres 1367.7
2062 Male, age 76, both hemispheres 1330.6
2327 Male, age 80, both hemispheres 1320.2
Motor trigeminal nucleus
nTPM: 1374.8
2560 Male, age 74, both hemispheres 1395.7
2321 Female, age 91, both hemispheres 1392.9
2335 Male, age 61, both hemispheres 1383.3
2309 Male, age 76, both hemispheres 1360.7
2079 Male, age 80, both hemispheres 1341.2
Nuclei of the trapezoid body
nTPM: 1351.8
2166 Male, age 80, both hemispheres 1374.1
1983 Male, age 76, both hemispheres 1367.5
2368 Female, age 91, both hemispheres 1367.5
2159 Male, age 61, both hemispheres 1343.7
2735 Female, age 85, both hemispheres 1306.0
Paramedian reticular nucleus
nTPM: 1380.4
2052 Male, age 76, both hemispheres 1405.7
2313 Male, age 61, both hemispheres 1375.5
2057 Male, age 80, both hemispheres 1373.5
2050 Female, age 85, both hemispheres 1367.0
Pontine nuclei
nTPM: 1370.9
2319 Female, age 91, both hemispheres 1413.4
2454 Male, age 74, left hemisphere 1393.5
2115 Male, age 80, left hemisphere 1371.9
1863 Male, age 55, unknown 1370.6
2787 Female, age 85, both hemispheres 1367.1
2109 Female, age 72, unknown 1361.9
1968 Male, age 76, left hemisphere 1353.4
2727 Male, age 61, right hemisphere 1335.7
Pontine raphe nucleus
nTPM: 1351.6
2122 Female, age 85, midline 1351.8
2853 Male, age 76, midline 1351.4
Posteroventral cochlear nucleus
nTPM: 1420.3
2341 Male, age 80, both hemispheres 1486.5
2135 Female, age 91, both hemispheres 1460.8
2371 Male, age 61, both hemispheres 1432.9
2752 Female, age 85, both hemispheres 1362.1
2070 Male, age 76, both hemispheres 1359.2
Principal sensory trigeminal nucleus
nTPM: 1349.8
2367 Female, age 91, left hemisphere 1395.4
2158 Male, age 61, both hemispheres 1344.8
2324 Male, age 76, both hemispheres 1332.0
2008 Male, age 80, left hemisphere 1327.0
Reticular pontine nucleus, caudal
nTPM: 1385.2
2559 Male, age 74, both hemispheres 1425.6
2457 Female, age 91, both hemispheres 1402.6
2092 Male, age 76, both hemispheres 1384.8
2332 Male, age 80, right hemisphere 1327.8
Reticular pontine nucleus, oral
nTPM: 1396.0
2366 Female, age 91, both hemispheres 1441.1
2361 Male, age 74, both hemispheres 1410.2
1939 Male, age 80, both hemispheres 1399.2
2167 Male, age 76, both hemispheres 1372.4
2012 Female, age 85, both hemispheres 1357.0
Reticulotegmental nucleus
nTPM: 1379.8
2452 Male, age 74, both hemispheres 1423.4
2322 Female, age 91, both hemispheres 1389.8
2333 Male, age 80, both hemispheres 1364.2
2325 Male, age 76, both hemispheres 1341.6
Spinal trigeminal nucleus, oral
nTPM: 1355.2
2164 Male, age 80, both hemispheres 1375.8
1978 Male, age 76, both hemispheres 1352.7
2737 Female, age 85, both hemispheres 1337.3
Subcoeruleus area
nTPM: 1383.6
2451 Male, age 74, both hemispheres 1441.2
2369 Female, age 85, left hemisphere 1419.9
1958 Male, age 80, both hemispheres 1370.9
2323 Female, age 91, left hemisphere 1349.1
2089 Male, age 76, left hemisphere 1336.9
Superior olive
nTPM: 1367.4
2561 Female, age 91, both hemispheres 1396.7
2020 Male, age 76, both hemispheres 1386.5
2364 Male, age 74, right hemisphere 1370.3
2329 Male, age 80, right hemisphere 1342.0
1875 Female, age 85, both hemispheres 1341.5
Superior vestibular nucleus
nTPM: 1395.9
2383 Male, age 74, both hemispheres 1417.7
2015 Male, age 80, both hemispheres 1404.3
2061 Male, age 76, both hemispheres 1365.8
Ventral periolivary nuclei
nTPM: 1356.5
2023 Male, age 76, both hemispheres 1393.8
2794 Female, age 91, left hemisphere 1382.0
2165 Male, age 80, both hemispheres 1357.4
2130 Female, age 85, both hemispheres 1292.8
Ventrolateral tegmental area, A5 NE cell group
nTPM: 1365.9
2359 Male, age 61, both hemispheres 1378.1
2161 Male, age 80, both hemispheres 1374.7
2456 Female, age 91, both hemispheres 1370.3
2840 Female, age 85, both hemispheres 1361.8
1959 Male, age 76, both hemispheres 1355.6
2449 Male, age 74, both hemispheres 1354.8

PONS - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

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Max Scaled Tags Per Million 407.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Locus coeruleus
Scaled Tags Per Million: 407.2
FF:10182-103D2 60 years, female 442.6
FF:10165-103B3 76 years, female 371.8
Pons
Scaled Tags Per Million: 214.4
FF:10033-101E6 18-54 years, mixed 214.4

PONS - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
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Average nTPM 349.8
Pig sample Sample description nTPM
Pons
nTPM: 349.8
Samples: 4

Max nTPM: 464.9
Min nTPM: 264.1
Sample A Female 288.9
Sample B Female 264.1
Sample C Male 464.9
Sample D Male 381.3

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