BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: High
Neuronal cells: High
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:45.2 nTPM
HPA:45.2 nTPM
GTEx:57.4 nTPM
FANTOM5:75.5 Scaled Tags Per Million
Pig:72.5 nTPM
Mouse:68.4 nTPM
Allen mouse:2.9 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA041189
Glial cells High
Neuronal cells High



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 45.2
Sample id Sample description nTPM
Caudate nucleus
nTPM: 42.5
2846 Female, age 79, unknown 45.7
1781 Male, age 74, unknown 44.2
2288 Male, age 75, left hemisphere 43.8
1857 Female, age 85, left hemisphere 43.2
2290 Female, age 72, unknown 42.9
1854 Male, age 80, left hemisphere 41.1
2481 Female, age 94, left hemisphere 40.6
2289 Male, age 61, right hemisphere 38.2
Claustrum
nTPM: 42.2
2198 Male, age 80, both hemispheres 46.1
2491 Male, age 75, both hemispheres 44.2
2196 Female, age 79, unknown 44.1
1956 Male, age 74, unknown 43.1
2284 Female, age 91, both hemispheres 41.7
2392 Female, age 94, both hemispheres 41.4
2292 Female, age 85, both hemispheres 41.0
2568 Male, age 61, both hemispheres 39.7
2645 Female, age 72, unknown 38.9
Globus pallidus, externus
nTPM: 42.4
2395 Male, age 75, both hemispheres 46.2
2772 Female, age 79, unknown 45.1
1996 Male, age 80, right hemisphere 43.8
2646 Male, age 61, right hemisphere 38.8
2567 Female, age 72, unknown 38.1
Globus pallidus, internus
nTPM: 41.9
2287 Male, age 75, right hemisphere 47.8
2483 Female, age 94, right hemisphere 45.3
2778 Female, age 91, both hemispheres 42.0
2037 Male, age 80, right hemisphere 41.3
2566 Female, age 72, unknown 39.9
1818 Male, age 74, unknown 39.5
2111 Female, age 85, right hemisphere 37.2
Nucleus accumbens
nTPM: 43.4
1783 Male, age 74, unknown 45.7
1856 Female, age 91, right hemisphere 45.3
2698 Female, age 72, unknown 45.2
1806 Female, age 85, left hemisphere 45.0
2286 Male, age 75, left hemisphere 42.4
2391 Female, age 94, left hemisphere 42.2
2732 Male, age 80, right hemisphere 41.1
2824 Male, age 61, right hemisphere 40.0
Nucleus basalis of Meynert
nTPM: 40.9
2821 Male, age 75, both hemispheres 42.8
2484 Female, age 94, left hemisphere 41.7
2393 Male, age 80, right hemisphere 40.2
2569 Male, age 61, both hemispheres 38.7
Nucleus of the diagonal band
nTPM: 45.2
1812 Female, age 91, both hemispheres 50.2
2775 Male, age 80, right hemisphere 45.6
2195 Female, age 85, both hemispheres 44.6
2029 Male, age 61, right hemisphere 42.9
1979 Male, age 74, unknown 42.8
Olfactory tubercle
nTPM: 42.9
1998 Female, age 91, both hemispheres 45.3
1846 Male, age 80, right hemisphere 44.2
2487 Female, age 94, left hemisphere 41.4
2856 Male, age 75, right hemisphere 40.6
Putamen
nTPM: 41.5
2466 Female, age 79, unknown 44.4
2482 Female, age 94, left hemisphere 42.6
1937 Female, age 91, right hemisphere 41.6
1829 Male, age 74, unknown 41.2
1838 Male, age 80, right hemisphere 41.1
2647 Male, age 75, left hemisphere 41.1
2489 Female, age 72, unknown 38.1
Septal nuclei
nTPM: 44.1
2031 Female, age 72, unknown 48.0
1960 Male, age 74, unknown 47.6
2009 Female, age 91, both hemispheres 46.6
2629 Female, age 94, right hemisphere 43.8
2059 Female, age 85, both hemispheres 42.7
2199 Male, age 80, right hemisphere 40.4
2394 Male, age 61, left hemisphere 39.8

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 57.4
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 52.8
Samples: 246

Max nTPM: 95.3
Min nTPM: 26.7
Std nTPM: 11.0
Median nTPM: 52.9
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 95.3
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 86.9
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 83.3
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 81.7
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 79.3
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 77.7
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 77.5
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 77.0
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 72.2
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 72.0
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 71.7
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 57.4
Samples: 246

Max nTPM: 101.7
Min nTPM: 16.4
Std nTPM: 13.8
Median nTPM: 59.2
GTEX-1LVAO-0011-R6b-SM-EZ6MX 60-69 years, male 101.7
GTEX-15RJE-0011-R6a-SM-7DHL8 40-49 years, male 90.4
GTEX-14E7W-0011-R6b-SM-5ZZV3 70-79 years, male 86.1
GTEX-11DZ1-0011-R6b-SM-DNZZG 50-59 years, male 85.9
GTEX-1A3MX-0011-R6a-SM-7P8S9 60-69 years, male 85.0
GTEX-1EKGG-0011-R6a-SM-CL538 60-69 years, male 83.0
GTEX-1F75W-0011-R6a-SM-9QEI5 60-69 years, male 83.0
GTEX-12WSF-0011-R6b-SM-5HL8W 70-79 years, male 79.2
GTEX-1B8L1-0011-R6b-SM-7P8SU 60-69 years, male 78.8
GTEX-X585-0011-R6A-SM-46MVJ 50-59 years, male 78.7
GTEX-12WSC-0011-R6b-SM-5LU99 50-59 years, male 78.4
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Brain - Putamen (basal ganglia)
Average nTPM: 51.2
Samples: 205

Max nTPM: 81.3
Min nTPM: 29.8
Std nTPM: 10.6
Median nTPM: 51.0
GTEX-16YQH-0011-R7a-SM-79ON1 30-39 years, male 81.3
GTEX-11PRG-0011-R7a-SM-DNZZT 50-59 years, male 78.0
GTEX-15RJE-0011-R7a-SM-7DHL9 40-49 years, male 77.2
GTEX-1ICLZ-0011-R7a-SM-ARZLU 60-69 years, male 75.4
GTEX-13N1W-0011-R7b-SM-5MR4F 70-79 years, male 73.5
GTEX-11DZ1-0011-R7a-SM-DNZZH 50-59 years, male 72.9
GTEX-1IY9M-0011-R7a-SM-D4P49 60-69 years, male 72.2
GTEX-S7SE-0011-R7A-SM-2XCDI 50-59 years, male 71.5
GTEX-1B996-0011-R7b-SM-7IGNT 60-69 years, male 70.8
GTEX-14PN4-0011-R7b-SM-69LQQ 50-59 years, male 70.5
GTEX-1LVAO-0011-R7a-SM-EYYWZ 60-69 years, male 70.3
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 75.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 73.1
FF:10164-103B2 76 years, female 73.1
Globus pallidus
Scaled Tags Per Million: 46.6
FF:10161-103A8 76 years, female 57.8
FF:10175-103C4 60 years, female 35.5
Nucleus accumbens
Scaled Tags Per Million: 62.2
FF:10037-101F1 23-56 years, mixed 62.2
Putamen
Scaled Tags Per Million: 75.5
FF:10176-103C5 60 years, female 75.5

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 72.5
Pig sample Sample description nTPM
Caudate
nTPM: 56.2
Samples: 4

Max nTPM: 62.0
Min nTPM: 52.9
Sample A Female 53.8
Sample B Female 56.1
Sample C Male 62.0
Sample D Male 52.9
Putamen
nTPM: 63.9
Samples: 4

Max nTPM: 71.3
Min nTPM: 53.3
Sample A Female 69.5
Sample B Female 53.3
Sample C Male 71.3
Sample D Male 61.3
Septum
nTPM: 72.5
Samples: 4

Max nTPM: 86.2
Min nTPM: 63.0
Sample A Female 75.9
Sample B Female 64.8
Sample C Male 86.2
Sample D Male 63.0
Ventral pallidum
nTPM: 59.7
Samples: 4

Max nTPM: 65.2
Min nTPM: 55.5
Sample A Female 55.5
Sample B Female 61.2
Sample C Male 65.2
Sample D Male 56.9

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 68.4
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 47.5
Samples: 4

Max nTPM: 51.9
Min nTPM: 44.8
Sample A Male 44.8
Sample B Male 45.7
Sample C Female 47.4
Sample D Female 51.9
Septum
nTPM: 68.4
Samples: 4

Max nTPM: 74.6
Min nTPM: 61.5
Sample A Male 61.5
Sample B Male 74.6
Sample C Female 67.5
Sample D Female 70.1
Ventral forebrain
nTPM: 47.6
Samples: 4

Max nTPM: 51.9
Min nTPM: 41.2
Sample A Male 41.2
Sample B Male 51.9
Sample C Female 50.2
Sample D Female 47.0

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 2.9
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 2.9
68269502 Antisense, RP_041129_01_F11, Mouse strain C57BL/6J (56 days, male) 2.9
Pallidum
Expression energy: 2.9
68269502 Antisense, RP_041129_01_F11, Mouse strain C57BL/6J (56 days, male) 2.9

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The Human Protein Atlas

The Human Protein Atlas project is funded
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