MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:48.5 nTPM
HPA:48.5 nTPM
GTEx:51.5 nTPM
FANTOM5:56.6 Scaled Tags Per Million
Pig:88.2 nTPM
Mouse:54.4 nTPM
Allen mouse:2.7 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 48.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 43.3
1827 Male, age 72, unknown 47.3
2828 Female, age 72, unknown 44.6
2586 Male, age 75, left hemisphere 44.0
2219 Male, age 76, both hemispheres 43.5
1870 Female, age 42, unknown 43.3
2411 Female, age 72, unknown 43.3
2666 Male, age 74, left hemisphere 43.3
1833 Male, age 53, unknown 42.7
1830 Male, age 51, unknown 40.6
2019 Male, age 18, unknown 40.1
Dorsal raphe nucleus
nTPM: 46.2
2298 Female, age 72, unknown 50.8
2047 Male, age 72, unknown 46.8
1828 Male, age 53, unknown 45.2
2016 Female, age 72, unknown 44.3
2750 Male, age 76, both hemispheres 44.1
Inferior colliculus
nTPM: 44.5
2097 Female, age 72, unknown 48.3
1848 Female, age 42, unknown 44.6
1890 Male, age 53, unknown 42.6
2849 Male, age 72, unknown 42.6
Median raphe nucleus
nTPM: 48.5
2220 Male, age 76, midline 48.5
Pedunculopontine tegmental nucleus
nTPM: 45.7
2338 Male, age 61, both hemispheres 46.4
2334 Male, age 80, both hemispheres 45.9
1921 Female, age 85, both hemispheres 45.0
Periaquaductal grey, anterior
nTPM: 46.5
1947 Male, age 18, unknown 48.4
1795 Male, age 51, unknown 45.8
2502 Female, age 75, unknown 45.2
Periaquaductal grey, dorsal
nTPM: 42.9
1840 Male, age 53, unknown 45.1
1831 Male, age 72, unknown 43.9
2464 Female, age 72, unknown 41.4
2850 Male, age 76, both hemispheres 41.1
Periaquaductal grey, lateral
nTPM: 43.3
2272 Male, age 74, both hemispheres 46.2
2053 Male, age 18, unknown 43.6
2140 Male, age 76, both hemispheres 40.2
Pretectal area
nTPM: 44.7
2224 Female, age 72, unknown 47.6
2273 Male, age 74, both hemispheres 46.0
1944 Female, age 72, unknown 45.7
2825 Male, age 18, unknown 45.7
1816 Male, age 51, unknown 45.5
1817 Female, age 42, unknown 44.8
1815 Male, age 53, unknown 44.5
2407 Male, age 75, both hemispheres 43.6
2007 Male, age 72, unknown 43.4
2316 Male, age 76, right hemisphere 42.4
2667 Female, age 75, unknown 42.4
Red nucleus
nTPM: 41.6
2725 Female, age 75, unknown 46.1
1821 Female, age 72, unknown 44.4
2588 Male, age 74, left hemisphere 42.8
2584 Male, age 75, left hemisphere 42.7
1954 Female, age 42, unknown 42.5
2227 Male, age 72, unknown 40.8
2503 Female, age 72, unknown 40.7
1904 Male, age 53, unknown 40.6
1865 Male, age 51, unknown 40.3
2769 Male, age 72, unknown 40.0
2785 Male, age 18, unknown 39.6
2823 Male, age 76, right hemisphere 38.9
Substantia nigra
nTPM: 47.2
1916 Female, age 42, unknown 56.1
2241 Male, age 72, unknown 50.6
1851 Male, age 51, unknown 49.8
2699 Male, age 18, unknown 48.9
1941 Male, age 53, unknown 46.6
1889 Female, age 72, unknown 46.4
2590 Female, age 75, unknown 43.9
2665 Male, age 74, both hemispheres 43.8
2583 Male, age 75, right hemisphere 43.1
2409 Female, age 72, unknown 42.8
Superior colliculus
nTPM: 43.3
1796 Male, age 53, unknown 47.0
2668 Female, age 75, unknown 44.7
2087 Female, age 72, unknown 44.1
2261 Male, age 18, unknown 44.1
1839 Male, age 51, unknown 44.0
2587 Male, age 74, left hemisphere 43.7
2664 Male, age 75, both hemispheres 42.5
1895 Male, age 76, right hemisphere 41.1
1913 Female, age 42, unknown 41.1
1995 Male, age 72, unknown 40.6
Ventral tegmental area
nTPM: 46.5
1915 Female, age 42, unknown 50.9
1942 Male, age 51, unknown 47.3
2218 Male, age 76, both hemispheres 47.1
2410 Female, age 72, unknown 46.1
2021 Male, age 53, unknown 44.8
2223 Female, age 72, unknown 43.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 51.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 51.5
Samples: 139

Max nTPM: 84.6
Min nTPM: 26.3
Std nTPM: 13.2
Median nTPM: 50.4
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 84.6
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 83.6
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 82.9
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 79.2
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 78.2
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 77.2
GTEX-X585-0011-R2B-SM-46MVF 50-59 years, male 76.6
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 76.1
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 73.4
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 73.4
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 72.8
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 56.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 56.6
FF:10158-103A5 76 years, female 56.6

MIDBRAIN - Pig RNA-seqi
Average nTPM 88.2
Pig sample Sample description nTPM
Midbrain
nTPM: 84.2
Samples: 4

Max nTPM: 110.7
Min nTPM: 73.7
Sample A Female 77.0
Sample B Female 75.5
Sample C Male 110.7
Sample D Male 73.7
Periaqueductal gray
nTPM: 75.9
Samples: 3

Max nTPM: 87.2
Min nTPM: 66.6
Sample B Female 73.9
Sample C Male 87.2
Sample D Male 66.6
Substantia nigra
nTPM: 72.1
Samples: 4

Max nTPM: 80.9
Min nTPM: 63.1
Sample A Female 80.1
Sample B Female 63.1
Sample C Male 80.9
Sample D Male 64.2
Superior colliculi
nTPM: 88.1
Samples: 4

Max nTPM: 111.9
Min nTPM: 74.5
Sample A Female 87.0
Sample B Female 74.5
Sample C Male 111.9
Sample D Male 79.1

MIDBRAIN - Mouse RNA-seqi
Average nTPM 54.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 54.4
Samples: 4

Max nTPM: 57.0
Min nTPM: 51.7
Sample A Male 51.7
Sample B Male 52.3
Sample C Female 56.5
Sample D Female 57.0

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 2.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 2.7
68269502 Antisense, RP_041129_01_F11, Mouse strain C57BL/6J (56 days, male) 2.7

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.