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SPTBN1
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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:210.6 nTPM
HPA:210.6 nTPM
GTEx:152.3 nTPM
FANTOM5:836.7 Scaled Tags Per Million
Pig:228.4 nTPM
Mouse:191.5 nTPM
Allen mouse:6.5 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max nTPM 210.6
Sample id Sample description nTPM
Amygdala
nTPM: 146.2
2695 Female, age 67, right hemisphere 196.8
2814 Male, age 76, right hemisphere 147.3
2517 Female, age 94, left hemisphere 147.1
2514 Male, age 75, right hemisphere 126.0
1987 Female, age 91, left hemisphere 113.8
Basal amygdala
nTPM: 188.1
2827 Female, age 67, right hemisphere 277.7
2609 Male, age 75, right hemisphere 219.8
2243 Female, age 91, right hemisphere 176.7
2685 Female, age 94, left hemisphere 175.6
2110 Male, age 80, left hemisphere 148.9
1955 Male, age 76, both hemispheres 129.8
Central amygdala
nTPM: 199.5
2826 Female, age 94, left hemisphere 444.4
2515 Male, age 75, right hemisphere 175.0
1905 Male, age 76, both hemispheres 144.3
2239 Male, age 80, left hemisphere 137.2
2701 Female, age 91, right hemisphere 96.7
Corticomedial amygdala
nTPM: 141.6
2428 Male, age 75, right hemisphere 182.4
2535 Female, age 67, right hemisphere 165.1
2829 Male, age 80, left hemisphere 159.3
2240 Male, age 76, both hemispheres 125.0
2429 Female, age 94, left hemisphere 111.9
2242 Female, age 91, right hemisphere 105.9
Lateral amygdala
nTPM: 210.6
2830 Female, age 67, right hemisphere 355.7
2516 Male, age 75, right hemisphere 259.4
2534 Female, age 94, left hemisphere 245.7
1883 Male, age 76, both hemispheres 157.1
2256 Male, age 80, left hemisphere 131.4
2255 Female, age 91, right hemisphere 114.3
Stria terminalis, bed nucleus
nTPM: 97.8
1974 Female, age 91, both hemispheres 134.1
2201 Male, age 74, unknown 89.7
2486 Female, age 94, both hemispheres 69.6

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 152.3
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 152.3
Samples: 152

Max nTPM: 407.9
Min nTPM: 43.7
Std nTPM: 64.4
Median nTPM: 139.7
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 407.9
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 339.5
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 335.7
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 329.7
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 328.3
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 324.3
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 291.9
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 282.4
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 282.1
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 276.6
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 263.6
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 254.4
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 247.1
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 241.2
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 235.2
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 234.7
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 229.4
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 227.9
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 223.8
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 220.9
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 218.3
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 218.2
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 218.1
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 214.9
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 212.2
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 208.0
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 206.9
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 201.7
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 197.4
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 197.3
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 196.9
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 193.3
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 193.2
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 189.0
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 185.6
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 185.1
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 182.5
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 182.4
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 181.8
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 181.7
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 172.2
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 171.5
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 170.8
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 169.9
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 169.8
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 167.3
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 166.7
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 166.3
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 163.7
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 163.4
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 162.1
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 161.7
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 160.4
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 160.1
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 158.9
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 158.6
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 158.5
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 157.3
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 157.1
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 154.3
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 154.2
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 152.7
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 151.3
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 149.7
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 149.4
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 147.8
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 145.2
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 145.0
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 144.3
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 143.8
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 143.3
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 143.2
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 140.8
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 140.2
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 140.0
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 139.9
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 139.4
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 139.1
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 137.1
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 137.0
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 136.6
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 135.8
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 135.7
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 135.5
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 134.9
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 134.7
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 134.3
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 134.2
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 134.1
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 131.6
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 131.4
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 130.2
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 129.3
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 126.1
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 126.0
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 124.5
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 123.8
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 122.0
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 120.6
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 119.3
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 119.0
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 119.0
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 118.9
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 118.8
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 117.4
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 116.7
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 116.1
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 116.0
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 114.0
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 110.2
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 110.2
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 109.7
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 109.3
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 109.0
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 107.9
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 107.9
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 106.6
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 106.5
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 105.8
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 105.6
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 104.8
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 104.2
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 102.5
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 100.8
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 98.0
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 96.2
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 95.9
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 95.0
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 94.2
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 91.9
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 91.0
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 90.2
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 90.0
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 87.7
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 87.2
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 85.6
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 85.1
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 81.0
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 80.9
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 79.2
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 78.0
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 75.8
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 72.7
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 70.1
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 69.2
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 66.1
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 65.3
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 61.2
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 59.1
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 56.3
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 53.1
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 43.7
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 836.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 836.7
FF:10151-102I7 76 years, female 836.7

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 228.4
Pig sample Sample description nTPM
Amygdala
nTPM: 228.4
Samples: 4

Max nTPM: 280.7
Min nTPM: 183.8
Sample A Female 280.7
Sample B Female 183.8
Sample C Male 229.0
Sample D Male 220.1

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 191.5
Mouse sample Sample description nTPM
Amygdala
nTPM: 191.6
Samples: 4

Max nTPM: 201.4
Min nTPM: 177.8
Sample A Male 201.4
Sample B Male 177.8
Sample C Female 187.3
Sample D Female 199.7

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 6.5
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 6.5
69885696 Antisense, RP_050512_03_C05, Mouse strain C57BL/6J (56 days, male) 6.5

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