MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:154.4 nTPM
HPA:154.4 nTPM
GTEx:126.9 nTPM
FANTOM5:460.4 Scaled Tags Per Million
Pig:239.1 nTPM
Mouse:157.2 nTPM
Allen mouse:2.5 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 154.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 129.4
2586 Male, age 75, left hemisphere 247.8
2666 Male, age 74, left hemisphere 175.3
2828 Female, age 72, unknown 146.4
1827 Male, age 72, unknown 137.0
2019 Male, age 18, unknown 130.7
1870 Female, age 42, unknown 93.9
2411 Female, age 72, unknown 92.9
2219 Male, age 76, both hemispheres 91.7
1830 Male, age 51, unknown 90.9
1833 Male, age 53, unknown 87.2
Dorsal raphe nucleus
nTPM: 101.3
2047 Male, age 72, unknown 121.6
1828 Male, age 53, unknown 111.6
2016 Female, age 72, unknown 100.9
2750 Male, age 76, both hemispheres 88.9
2298 Female, age 72, unknown 83.7
Inferior colliculus
nTPM: 89.8
2849 Male, age 72, unknown 99.5
1890 Male, age 53, unknown 93.5
1848 Female, age 42, unknown 91.9
2097 Female, age 72, unknown 74.5
Median raphe nucleus
nTPM: 85.8
2220 Male, age 76, midline 85.8
Pedunculopontine tegmental nucleus
nTPM: 89.4
2334 Male, age 80, both hemispheres 101.9
1921 Female, age 85, both hemispheres 87.3
2338 Male, age 61, both hemispheres 78.9
Periaquaductal grey, anterior
nTPM: 138.9
1795 Male, age 51, unknown 142.7
2502 Female, age 75, unknown 140.1
1947 Male, age 18, unknown 133.9
Periaquaductal grey, dorsal
nTPM: 104.9
1840 Male, age 53, unknown 112.8
2850 Male, age 76, both hemispheres 112.7
1831 Male, age 72, unknown 105.8
2464 Female, age 72, unknown 88.1
Periaquaductal grey, lateral
nTPM: 97.8
2053 Male, age 18, unknown 121.2
2140 Male, age 76, both hemispheres 98.3
2272 Male, age 74, both hemispheres 73.9
Pretectal area
nTPM: 142.2
1816 Male, age 51, unknown 222.3
2007 Male, age 72, unknown 195.7
1815 Male, age 53, unknown 193.8
1944 Female, age 72, unknown 187.0
1817 Female, age 42, unknown 177.6
2407 Male, age 75, both hemispheres 131.8
2667 Female, age 75, unknown 109.3
2825 Male, age 18, unknown 104.4
2316 Male, age 76, right hemisphere 82.4
2273 Male, age 74, both hemispheres 80.8
2224 Female, age 72, unknown 78.9
Red nucleus
nTPM: 140.1
2588 Male, age 74, left hemisphere 233.7
2584 Male, age 75, left hemisphere 195.3
2503 Female, age 72, unknown 181.3
2725 Female, age 75, unknown 143.0
2785 Male, age 18, unknown 137.7
1821 Female, age 72, unknown 131.8
1865 Male, age 51, unknown 122.8
1904 Male, age 53, unknown 120.1
2769 Male, age 72, unknown 108.0
1954 Female, age 42, unknown 107.3
2227 Male, age 72, unknown 100.9
2823 Male, age 76, right hemisphere 99.5
Substantia nigra
nTPM: 154.4
2665 Male, age 74, both hemispheres 195.6
1916 Female, age 42, unknown 164.6
1851 Male, age 51, unknown 161.9
2583 Male, age 75, right hemisphere 160.6
1889 Female, age 72, unknown 159.9
2590 Female, age 75, unknown 157.2
1941 Male, age 53, unknown 151.6
2699 Male, age 18, unknown 136.0
2409 Female, age 72, unknown 128.8
2241 Male, age 72, unknown 127.7
Superior colliculus
nTPM: 138.9
2664 Male, age 75, both hemispheres 176.7
2261 Male, age 18, unknown 161.4
2668 Female, age 75, unknown 157.3
2087 Female, age 72, unknown 154.8
2587 Male, age 74, left hemisphere 140.5
1796 Male, age 53, unknown 138.3
1995 Male, age 72, unknown 131.6
1913 Female, age 42, unknown 118.6
1839 Male, age 51, unknown 108.7
1895 Male, age 76, right hemisphere 101.1
Ventral tegmental area
nTPM: 111.2
2410 Female, age 72, unknown 130.2
1915 Female, age 42, unknown 121.1
1942 Male, age 51, unknown 110.9
2223 Female, age 72, unknown 105.3
2218 Male, age 76, both hemispheres 101.8
2021 Male, age 53, unknown 97.8

MIDBRAIN - GTEx RNA-seqi
Average nTPM 126.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 126.9
Samples: 139

Max nTPM: 298.9
Min nTPM: 35.5
Std nTPM: 49.5
Median nTPM: 112.2
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 298.9
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 276.9
GTEX-1IL2U-0011-R2a-SM-ARU6V 60-69 years, male 248.9
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 239.8
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 234.9
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 233.2
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 232.1
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 227.9
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 227.0
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 207.8
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 207.5
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 460.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 460.4
FF:10158-103A5 76 years, female 460.4

MIDBRAIN - Pig RNA-seqi
Average nTPM 239.1
Pig sample Sample description nTPM
Midbrain
nTPM: 226.1
Samples: 4

Max nTPM: 303.7
Min nTPM: 160.3
Sample A Female 230.6
Sample B Female 160.3
Sample C Male 303.7
Sample D Male 209.6
Periaqueductal gray
nTPM: 148.2
Samples: 3

Max nTPM: 166.0
Min nTPM: 133.1
Sample B Female 145.5
Sample C Male 166.0
Sample D Male 133.1
Substantia nigra
nTPM: 196.1
Samples: 4

Max nTPM: 208.1
Min nTPM: 180.6
Sample A Female 207.3
Sample B Female 180.6
Sample C Male 208.1
Sample D Male 188.3
Superior colliculi
nTPM: 239.1
Samples: 4

Max nTPM: 259.5
Min nTPM: 219.1
Sample A Female 219.1
Sample B Female 246.4
Sample C Male 259.5
Sample D Male 231.4

MIDBRAIN - Mouse RNA-seqi
Average nTPM 157.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 157.2
Samples: 4

Max nTPM: 168.0
Min nTPM: 137.4
Sample A Male 137.4
Sample B Male 157.5
Sample C Female 168.0
Sample D Female 165.9

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 2.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 2.5
69885696 Antisense, RP_050512_03_C05, Mouse strain C57BL/6J (56 days, male) 2.5

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.