MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:286.0 nTPM
HPA:286.0 nTPM
GTEx:380.0 nTPM
FANTOM5:85.2 Scaled Tags Per Million
Pig:240.6 nTPM
Mouse:233.8 nTPM
Allen mouse:10.5 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 286.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 274.2
2019 Male, age 18, unknown 285.8
2411 Female, age 72, unknown 285.5
1827 Male, age 72, unknown 279.4
1870 Female, age 42, unknown 278.4
2219 Male, age 76, both hemispheres 277.4
2828 Female, age 72, unknown 277.0
1830 Male, age 51, unknown 269.6
1833 Male, age 53, unknown 268.6
2666 Male, age 74, left hemisphere 264.8
2586 Male, age 75, left hemisphere 255.7
Dorsal raphe nucleus
nTPM: 282.0
2298 Female, age 72, unknown 292.2
2750 Male, age 76, both hemispheres 281.9
2047 Male, age 72, unknown 279.8
1828 Male, age 53, unknown 279.5
2016 Female, age 72, unknown 276.5
Inferior colliculus
nTPM: 278.4
2097 Female, age 72, unknown 283.4
1890 Male, age 53, unknown 279.8
1848 Female, age 42, unknown 277.1
2849 Male, age 72, unknown 273.3
Median raphe nucleus
nTPM: 285.9
2220 Male, age 76, midline 285.9
Pedunculopontine tegmental nucleus
nTPM: 285.0
2338 Male, age 61, both hemispheres 287.6
2334 Male, age 80, both hemispheres 284.7
1921 Female, age 85, both hemispheres 282.6
Periaquaductal grey, anterior
nTPM: 273.0
1947 Male, age 18, unknown 275.5
1795 Male, age 51, unknown 273.9
2502 Female, age 75, unknown 269.4
Periaquaductal grey, dorsal
nTPM: 276.2
1840 Male, age 53, unknown 282.6
2850 Male, age 76, both hemispheres 276.9
2464 Female, age 72, unknown 273.1
1831 Male, age 72, unknown 272.2
Periaquaductal grey, lateral
nTPM: 278.6
2272 Male, age 74, both hemispheres 294.6
2140 Male, age 76, both hemispheres 274.7
2053 Male, age 18, unknown 266.6
Pretectal area
nTPM: 283.8
2667 Female, age 75, unknown 295.5
1944 Female, age 72, unknown 294.2
2273 Male, age 74, both hemispheres 293.1
1817 Female, age 42, unknown 291.9
2007 Male, age 72, unknown 289.3
1816 Male, age 51, unknown 285.7
1815 Male, age 53, unknown 282.0
2224 Female, age 72, unknown 280.4
2407 Male, age 75, both hemispheres 275.4
2825 Male, age 18, unknown 270.7
2316 Male, age 76, right hemisphere 263.2
Red nucleus
nTPM: 275.8
1821 Female, age 72, unknown 287.1
2725 Female, age 75, unknown 282.3
1904 Male, age 53, unknown 280.7
1954 Female, age 42, unknown 280.7
2503 Female, age 72, unknown 278.9
1865 Male, age 51, unknown 278.8
2785 Male, age 18, unknown 278.7
2227 Male, age 72, unknown 275.1
2769 Male, age 72, unknown 273.0
2823 Male, age 76, right hemisphere 272.4
2588 Male, age 74, left hemisphere 263.4
2584 Male, age 75, left hemisphere 258.3
Substantia nigra
nTPM: 284.6
1916 Female, age 42, unknown 303.1
1851 Male, age 51, unknown 293.7
2409 Female, age 72, unknown 290.5
1889 Female, age 72, unknown 290.3
2241 Male, age 72, unknown 288.6
1941 Male, age 53, unknown 286.6
2699 Male, age 18, unknown 286.0
2590 Female, age 75, unknown 272.3
2665 Male, age 74, both hemispheres 271.0
2583 Male, age 75, right hemisphere 264.5
Superior colliculus
nTPM: 273.1
2587 Male, age 74, left hemisphere 283.5
2087 Female, age 72, unknown 278.9
2261 Male, age 18, unknown 276.9
1796 Male, age 53, unknown 275.7
1895 Male, age 76, right hemisphere 275.6
1995 Male, age 72, unknown 270.9
2668 Female, age 75, unknown 270.7
1913 Female, age 42, unknown 268.8
1839 Male, age 51, unknown 266.7
2664 Male, age 75, both hemispheres 263.0
Ventral tegmental area
nTPM: 286.0
1915 Female, age 42, unknown 296.0
2410 Female, age 72, unknown 295.4
2218 Male, age 76, both hemispheres 289.5
1942 Male, age 51, unknown 280.9
2223 Female, age 72, unknown 279.2
2021 Male, age 53, unknown 274.7

MIDBRAIN - GTEx RNA-seqi
Average nTPM 380.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 380.0
Samples: 139

Max nTPM: 607.3
Min nTPM: 237.9
Std nTPM: 70.2
Median nTPM: 366.6
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 607.3
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 592.7
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 591.8
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 556.8
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 542.7
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 542.2
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 526.0
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 515.1
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 508.9
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 504.9
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 504.4
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 85.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 85.2
FF:10158-103A5 76 years, female 85.2

MIDBRAIN - Pig RNA-seqi
Average nTPM 240.6
Pig sample Sample description nTPM
Midbrain
nTPM: 240.7
Samples: 4

Max nTPM: 431.3
Min nTPM: 173.2
Sample A Female 431.3
Sample B Female 184.6
Sample C Male 173.5
Sample D Male 173.2
Periaqueductal gray
nTPM: 167.7
Samples: 3

Max nTPM: 181.1
Min nTPM: 160.2
Sample B Female 161.7
Sample C Male 181.1
Sample D Male 160.2
Substantia nigra
nTPM: 221.8
Samples: 4

Max nTPM: 292.9
Min nTPM: 167.3
Sample A Female 292.9
Sample B Female 167.3
Sample C Male 211.0
Sample D Male 215.9
Superior colliculi
nTPM: 215.2
Samples: 4

Max nTPM: 275.4
Min nTPM: 179.2
Sample A Female 275.4
Sample B Female 179.2
Sample C Male 208.3
Sample D Male 197.9

MIDBRAIN - Mouse RNA-seqi
Average nTPM 233.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 233.8
Samples: 4

Max nTPM: 248.6
Min nTPM: 218.2
Sample A Male 241.3
Sample B Male 227.1
Sample C Female 218.2
Sample D Female 248.6

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 10.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 10.5
112194293 Antisense, RP_110421_01_E04, Mouse strain C57BL/6J (56 days, male) 10.5
513239 Antisense, RP_040810_01_D07, Mouse strain C57BL/6J (56 days, male) 10.4

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The Human Protein Atlas

The Human Protein Atlas project is funded
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