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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:295.2 nTPM
HPA:295.2 nTPM
GTEx:339.2 nTPM
FANTOM5:83.0 Scaled Tags Per Million
Pig:303.2 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max nTPM 295.2
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 287.7
1981 Female, age 72, midline 310.1
2048 Male, age 55, midline 286.2
2194 Female, age 79, both hemispheres 285.6
2816 Male, age 47, midline 278.8
2565 Male, age 75, midline 278.0
Cervical spinal cord, dorsal horn
nTPM: 295.2
2173 Female, age 72, unknown 315.6
2296 Male, age 66, both hemispheres 310.9
2069 Male, age 47, both hemispheres 300.3
1877 Male, age 55, unknown 284.9
2721 Male, age 90, both hemispheres 281.1
2297 Male, age 75, both hemispheres 278.4
Cervical spinal cord, ventral horn
nTPM: 290.5
2098 Female, age 72, unknown 318.1
2480 Male, age 75, both hemispheres 296.0
2809 Male, age 90, both hemispheres 287.7
2295 Male, age 66, both hemispheres 285.4
2068 Male, age 55, unknown 281.6
2820 Female, age 79, both hemispheres 274.4

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 339.2
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 339.2
Samples: 159

Max nTPM: 547.6
Min nTPM: 193.2
Std nTPM: 62.4
Median nTPM: 331.9
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 547.6
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 536.9
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 514.5
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 504.5
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 499.0
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 485.7
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 467.1
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 452.0
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 451.6
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 446.6
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 439.7
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 438.1
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 437.3
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 432.6
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 424.1
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 422.7
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 418.3
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 415.4
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 414.5
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 410.9
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 408.5
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 407.2
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 407.0
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 402.1
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 398.2
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 397.5
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 397.1
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 397.0
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 390.7
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 389.4
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 387.1
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 382.7
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 382.6
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 380.4
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 376.3
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 374.3
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 374.2
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 371.5
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 370.8
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 370.2
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 370.0
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 369.7
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 369.6
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 369.3
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 368.5
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 368.1
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 366.3
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 365.0
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 364.8
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 363.6
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 362.6
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 359.5
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 359.4
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 357.3
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 352.3
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 350.2
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 348.6
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 348.3
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 347.8
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 347.2
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 345.9
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 343.9
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 343.6
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 342.6
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 340.1
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 338.9
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 337.7
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 336.4
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 335.9
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 335.8
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 335.7
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 335.4
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 335.1
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 334.0
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 333.7
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 332.7
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 332.5
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 332.5
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 331.9
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 331.9
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 331.4
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 331.0
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 329.6
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 329.0
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 328.1
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 327.4
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 326.8
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 326.6
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 326.2
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 323.3
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 320.4
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 319.5
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 317.5
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 317.4
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 316.0
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 313.6
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 313.4
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 313.1
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 312.7
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 311.7
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 311.7
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 309.8
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 308.9
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 307.7
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 307.6
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 306.8
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 306.4
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 305.5
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 304.5
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 304.1
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 304.1
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 303.9
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 303.8
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 303.8
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 303.7
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 303.2
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 303.0
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 302.3
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 300.8
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 300.3
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 300.2
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 300.0
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 299.6
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 296.9
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 292.7
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 292.2
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 291.9
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 291.6
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 291.4
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 290.3
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 289.9
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 289.6
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 285.7
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 284.8
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 281.8
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 281.6
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 280.8
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 278.3
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 278.0
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 277.1
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 276.5
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 276.1
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 269.8
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 265.9
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 265.6
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 265.4
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 263.1
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 259.9
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 257.1
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 255.1
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 253.4
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 252.6
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 246.1
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 243.4
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 242.6
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 239.4
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 213.6
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 212.1
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 193.2
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 83.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 83.0
FF:10181-103D1 60 years, female 99.9
FF:10159-103A6 76 years, female 66.1

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 303.2
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 257.1
Samples: 4

Max nTPM: 273.4
Min nTPM: 245.6
Sample A Female 256.1
Sample B Female 245.6
Sample C Male 273.4
Sample D Male 253.3
Ventral spinal cord
nTPM: 303.2
Samples: 4

Max nTPM: 319.4
Min nTPM: 272.8
Sample A Female 272.8
Sample B Female 310.1
Sample C Male 310.4
Sample D Male 319.4

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