BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: High
Neuronal cells: High
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:42.6 nTPM
HPA:42.6 nTPM
GTEx:46.3 nTPM
FANTOM5:169.2 Scaled Tags Per Million
Pig:55.3 nTPM
Mouse:27.0 nTPM
Allen mouse:14.0 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA008762
Glial cells High
Neuronal cells High



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 42.6
Sample id Sample description nTPM
Caudate nucleus
nTPM: 38.5
1781 Male, age 74, unknown 40.7
2290 Female, age 72, unknown 38.8
2846 Female, age 79, unknown 38.8
2481 Female, age 94, left hemisphere 38.7
2288 Male, age 75, left hemisphere 38.6
1857 Female, age 85, left hemisphere 38.0
2289 Male, age 61, right hemisphere 37.6
1854 Male, age 80, left hemisphere 36.7
Claustrum
nTPM: 40.7
1956 Male, age 74, unknown 42.9
2292 Female, age 85, both hemispheres 42.0
2491 Male, age 75, both hemispheres 41.8
2645 Female, age 72, unknown 41.4
2196 Female, age 79, unknown 40.9
2392 Female, age 94, both hemispheres 40.1
2198 Male, age 80, both hemispheres 39.6
2284 Female, age 91, both hemispheres 39.3
2568 Male, age 61, both hemispheres 38.5
Globus pallidus, externus
nTPM: 40.7
2646 Male, age 61, right hemisphere 41.5
2567 Female, age 72, unknown 41.1
2395 Male, age 75, both hemispheres 41.0
1996 Male, age 80, right hemisphere 40.8
2772 Female, age 79, unknown 39.3
Globus pallidus, internus
nTPM: 42.6
2111 Female, age 85, right hemisphere 45.7
2778 Female, age 91, both hemispheres 43.7
2287 Male, age 75, right hemisphere 43.6
2566 Female, age 72, unknown 42.6
2037 Male, age 80, right hemisphere 41.7
1818 Male, age 74, unknown 41.2
2483 Female, age 94, right hemisphere 39.8
Nucleus accumbens
nTPM: 39.0
2698 Female, age 72, unknown 43.9
2391 Female, age 94, left hemisphere 42.0
2824 Male, age 61, right hemisphere 39.9
1783 Male, age 74, unknown 39.7
2286 Male, age 75, left hemisphere 38.7
2732 Male, age 80, right hemisphere 38.3
1806 Female, age 85, left hemisphere 35.8
1856 Female, age 91, right hemisphere 33.6
Nucleus basalis of Meynert
nTPM: 39.8
2821 Male, age 75, both hemispheres 46.0
2484 Female, age 94, left hemisphere 38.7
2569 Male, age 61, both hemispheres 37.8
2393 Male, age 80, right hemisphere 36.8
Nucleus of the diagonal band
nTPM: 38.6
1979 Male, age 74, unknown 40.2
2195 Female, age 85, both hemispheres 40.0
2029 Male, age 61, right hemisphere 39.9
2775 Male, age 80, right hemisphere 36.9
1812 Female, age 91, both hemispheres 36.2
Olfactory tubercle
nTPM: 39.0
2856 Male, age 75, right hemisphere 40.9
2487 Female, age 94, left hemisphere 40.3
1846 Male, age 80, right hemisphere 37.8
1998 Female, age 91, both hemispheres 36.8
Putamen
nTPM: 39.0
2489 Female, age 72, unknown 42.7
2647 Male, age 75, left hemisphere 40.4
1829 Male, age 74, unknown 40.0
2466 Female, age 79, unknown 39.9
2482 Female, age 94, left hemisphere 39.7
1838 Male, age 80, right hemisphere 35.5
1937 Female, age 91, right hemisphere 34.9
Septal nuclei
nTPM: 38.2
2629 Female, age 94, right hemisphere 41.0
2199 Male, age 80, right hemisphere 39.3
1960 Male, age 74, unknown 38.1
2059 Female, age 85, both hemispheres 38.1
2031 Female, age 72, unknown 37.7
2394 Male, age 61, left hemisphere 36.8
2009 Female, age 91, both hemispheres 36.4

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 46.3
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 45.8
Samples: 246

Max nTPM: 78.0
Min nTPM: 29.1
Std nTPM: 6.8
Median nTPM: 45.8
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 78.0
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 66.4
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 64.2
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 62.8
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 61.7
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 59.7
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 59.5
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 59.2
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 58.4
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 58.2
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 57.1
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 44.0
Samples: 246

Max nTPM: 75.0
Min nTPM: 28.6
Std nTPM: 6.5
Median nTPM: 43.4
GTEX-1HFI6-0011-R6b-SM-CM2SR 40-49 years, male 75.0
GTEX-P44H-0011-R6A-SM-2XCF3 40-49 years, male 71.3
GTEX-ZUA1-0011-R6b-SM-4YCDD 40-49 years, male 69.2
GTEX-14C5O-0011-R6a-SM-5YYB6 60-69 years, male 66.1
GTEX-QMR6-0011-R6A-SM-32PKP 50-59 years, male 65.0
GTEX-1C6WA-0011-R6a-SM-7PBYP 60-69 years, male 58.4
GTEX-1EN7A-0011-R6b-SM-9QEHW 40-49 years, male 56.5
GTEX-WVLH-0011-R6A-SM-3MJFZ 50-59 years, male 56.0
GTEX-13FXS-0011-R6b-SM-5L3F7 50-59 years, male 55.9
GTEX-YFC4-0011-R6b-SM-4V6E1 40-49 years, female 55.7
GTEX-QDT8-0011-R6A-SM-32PKI 30-39 years, female 55.6
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Brain - Putamen (basal ganglia)
Average nTPM: 46.3
Samples: 205

Max nTPM: 72.5
Min nTPM: 30.6
Std nTPM: 6.8
Median nTPM: 46.0
GTEX-QMR6-0011-R7A-SM-32PKL 50-59 years, male 72.5
GTEX-14C5O-0011-R7b-SM-5YYAH 60-69 years, male 67.8
GTEX-QDT8-0011-R7A-SM-32PKF 30-39 years, female 65.9
GTEX-1HB9E-0011-R7b-SM-A9G1Q 50-59 years, male 65.4
GTEX-1I1CD-0011-R7a-SM-CMKHA 60-69 years, female 64.2
GTEX-1AX9I-0011-R7b-SM-7P8Q3 60-69 years, male 63.1
GTEX-ZVZQ-0011-R7b-SM-57WBB 60-69 years, female 60.3
GTEX-WHSE-0011-R7A-SM-3P5YZ 20-29 years, male 58.7
GTEX-14ABY-0011-R7b-SM-5PNWS 50-59 years, male 58.5
GTEX-RNOR-0011-R7A-SM-2TF4V 50-59 years, female 58.4
GTEX-13RTJ-0011-R7b-SM-5P9JS 60-69 years, male 58.3
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 169.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 135.7
FF:10164-103B2 76 years, female 135.7
Globus pallidus
Scaled Tags Per Million: 169.2
FF:10175-103C4 60 years, female 169.7
FF:10161-103A8 76 years, female 168.7
Nucleus accumbens
Scaled Tags Per Million: 133.3
FF:10037-101F1 23-56 years, mixed 133.3
Putamen
Scaled Tags Per Million: 150.2
FF:10176-103C5 60 years, female 150.2

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 55.3
Pig sample Sample description nTPM
Caudate
nTPM: 50.7
Samples: 4

Max nTPM: 55.1
Min nTPM: 47.4
Sample A Female 55.1
Sample B Female 47.4
Sample C Male 50.5
Sample D Male 49.9
Putamen
nTPM: 55.3
Samples: 4

Max nTPM: 60.0
Min nTPM: 51.1
Sample A Female 54.2
Sample B Female 55.8
Sample C Male 60.0
Sample D Male 51.1
Septum
nTPM: 54.4
Samples: 4

Max nTPM: 56.1
Min nTPM: 51.9
Sample A Female 56.1
Sample B Female 55.4
Sample C Male 51.9
Sample D Male 54.1
Ventral pallidum
nTPM: 52.1
Samples: 4

Max nTPM: 56.3
Min nTPM: 47.0
Sample A Female 56.3
Sample B Female 54.2
Sample C Male 47.0
Sample D Male 50.7

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 27.0
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 27.0
Samples: 4

Max nTPM: 28.9
Min nTPM: 23.3
Sample A Male 28.3
Sample B Male 27.3
Sample C Female 28.9
Sample D Female 23.3
Septum
nTPM: 27.0
Samples: 4

Max nTPM: 27.8
Min nTPM: 25.6
Sample A Male 26.8
Sample B Male 27.6
Sample C Female 25.6
Sample D Female 27.8
Ventral forebrain
nTPM: 27.1
Samples: 4

Max nTPM: 30.6
Min nTPM: 21.5
Sample A Male 30.6
Sample B Male 26.4
Sample C Female 21.5
Sample D Female 29.7

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 14.0
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 14.0
69202818 Antisense, RP_050324_04_D10, Mouse strain C57BL/6J (56 days, male) 14.0
Pallidum
Expression energy: 13.0
69202818 Antisense, RP_050324_04_D10, Mouse strain C57BL/6J (56 days, male) 13.0

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