MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:40.7 nTPM
HPA:40.7 nTPM
GTEx:50.2 nTPM
FANTOM5:183.9 Scaled Tags Per Million
Pig:49.3 nTPM
Mouse:36.5 nTPM
Allen mouse:12.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 40.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 39.8
1830 Male, age 51, unknown 42.1
2666 Male, age 74, left hemisphere 41.7
1870 Female, age 42, unknown 40.4
2219 Male, age 76, both hemispheres 40.2
2828 Female, age 72, unknown 40.1
2411 Female, age 72, unknown 39.8
1833 Male, age 53, unknown 39.7
1827 Male, age 72, unknown 39.3
2019 Male, age 18, unknown 39.2
2586 Male, age 75, left hemisphere 34.9
Dorsal raphe nucleus
nTPM: 37.6
2750 Male, age 76, both hemispheres 40.3
2016 Female, age 72, unknown 39.1
1828 Male, age 53, unknown 36.8
2047 Male, age 72, unknown 36.1
2298 Female, age 72, unknown 35.7
Inferior colliculus
nTPM: 39.1
2849 Male, age 72, unknown 41.8
1848 Female, age 42, unknown 38.7
2097 Female, age 72, unknown 38.2
1890 Male, age 53, unknown 37.6
Median raphe nucleus
nTPM: 39.7
2220 Male, age 76, midline 39.7
Pedunculopontine tegmental nucleus
nTPM: 40.7
2334 Male, age 80, both hemispheres 41.6
2338 Male, age 61, both hemispheres 40.3
1921 Female, age 85, both hemispheres 40.2
Periaquaductal grey, anterior
nTPM: 36.8
1795 Male, age 51, unknown 37.1
2502 Female, age 75, unknown 36.9
1947 Male, age 18, unknown 36.3
Periaquaductal grey, dorsal
nTPM: 39.2
2850 Male, age 76, both hemispheres 44.6
1831 Male, age 72, unknown 38.9
1840 Male, age 53, unknown 36.6
2464 Female, age 72, unknown 36.6
Periaquaductal grey, lateral
nTPM: 38.4
2140 Male, age 76, both hemispheres 41.9
2053 Male, age 18, unknown 38.0
2272 Male, age 74, both hemispheres 35.2
Pretectal area
nTPM: 38.6
2316 Male, age 76, right hemisphere 41.8
2407 Male, age 75, both hemispheres 39.6
1815 Male, age 53, unknown 39.0
2007 Male, age 72, unknown 39.0
2825 Male, age 18, unknown 38.8
2224 Female, age 72, unknown 38.5
2667 Female, age 75, unknown 38.2
1816 Male, age 51, unknown 38.0
1817 Female, age 42, unknown 38.0
1944 Female, age 72, unknown 37.4
2273 Male, age 74, both hemispheres 36.5
Red nucleus
nTPM: 39.9
2503 Female, age 72, unknown 44.1
2725 Female, age 75, unknown 42.5
1904 Male, age 53, unknown 41.2
1821 Female, age 72, unknown 40.2
2227 Male, age 72, unknown 39.9
1865 Male, age 51, unknown 39.5
2769 Male, age 72, unknown 39.5
2823 Male, age 76, right hemisphere 39.1
1954 Female, age 42, unknown 39.0
2785 Male, age 18, unknown 38.6
2588 Male, age 74, left hemisphere 38.5
2584 Male, age 75, left hemisphere 37.1
Substantia nigra
nTPM: 36.4
2699 Male, age 18, unknown 40.1
1941 Male, age 53, unknown 38.0
2665 Male, age 74, both hemispheres 37.6
1851 Male, age 51, unknown 36.7
1889 Female, age 72, unknown 36.2
2583 Male, age 75, right hemisphere 35.8
2409 Female, age 72, unknown 35.5
2590 Female, age 75, unknown 35.3
1916 Female, age 42, unknown 35.0
2241 Male, age 72, unknown 34.1
Superior colliculus
nTPM: 38.5
1913 Female, age 42, unknown 42.2
1995 Male, age 72, unknown 40.4
1796 Male, age 53, unknown 39.5
1895 Male, age 76, right hemisphere 39.0
1839 Male, age 51, unknown 38.1
2087 Female, age 72, unknown 37.7
2668 Female, age 75, unknown 37.6
2587 Male, age 74, left hemisphere 37.3
2261 Male, age 18, unknown 36.7
2664 Male, age 75, both hemispheres 36.4
Ventral tegmental area
nTPM: 38.6
2218 Male, age 76, both hemispheres 41.6
2223 Female, age 72, unknown 39.7
2021 Male, age 53, unknown 38.6
1915 Female, age 42, unknown 37.5
2410 Female, age 72, unknown 37.4
1942 Male, age 51, unknown 36.9

MIDBRAIN - GTEx RNA-seqi
Average nTPM 50.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 50.2
Samples: 139

Max nTPM: 82.9
Min nTPM: 28.0
Std nTPM: 9.7
Median nTPM: 49.1
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 82.9
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 79.7
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 77.8
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 76.7
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 75.8
GTEX-11ZTS-0011-R2b-SM-5BC75 60-69 years, female 71.0
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 69.9
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 69.1
GTEX-132Q8-0011-R2b-SM-5EQ5Z 60-69 years, male 66.7
GTEX-QMR6-0011-R2A-SM-32PKV 50-59 years, male 65.7
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 65.6
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 183.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 183.9
FF:10158-103A5 76 years, female 183.9

MIDBRAIN - Pig RNA-seqi
Average nTPM 49.3
Pig sample Sample description nTPM
Midbrain
nTPM: 48.3
Samples: 4

Max nTPM: 49.1
Min nTPM: 47.0
Sample A Female 49.1
Sample B Female 48.2
Sample C Male 47.0
Sample D Male 48.7
Periaqueductal gray
nTPM: 49.3
Samples: 3

Max nTPM: 51.6
Min nTPM: 47.1
Sample B Female 49.2
Sample C Male 47.1
Sample D Male 51.6
Substantia nigra
nTPM: 47.1
Samples: 4

Max nTPM: 51.9
Min nTPM: 36.6
Sample A Female 36.6
Sample B Female 49.7
Sample C Male 50.0
Sample D Male 51.9
Superior colliculi
nTPM: 44.5
Samples: 4

Max nTPM: 48.2
Min nTPM: 36.0
Sample A Female 36.0
Sample B Female 45.9
Sample C Male 47.8
Sample D Male 48.2

MIDBRAIN - Mouse RNA-seqi
Average nTPM 36.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 36.5
Samples: 4

Max nTPM: 37.7
Min nTPM: 35.6
Sample A Male 36.3
Sample B Male 37.7
Sample C Female 36.2
Sample D Female 35.6

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 12.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 12.0
69202818 Antisense, RP_050324_04_D10, Mouse strain C57BL/6J (56 days, male) 12.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
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