BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Low
Neuronal cells: Low
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:55.7 nTPM
HPA:55.7 nTPM
GTEx:56.5 nTPM
FANTOM5:44.9 Scaled Tags Per Million
Pig:54.5 nTPM
Mouse:47.2 nTPM
Allen mouse:5.9 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA028100Antibody HPA028134
Glial cells LowLow
Neuronal cells MediumLow





BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 55.7
Sample id Sample description nTPM
Caudate nucleus
nTPM: 55.7
2846 Female, age 79, unknown 58.2
2481 Female, age 94, left hemisphere 57.3
1857 Female, age 85, left hemisphere 56.3
1854 Male, age 80, left hemisphere 55.7
2288 Male, age 75, left hemisphere 55.4
2290 Female, age 72, unknown 55.3
1781 Male, age 74, unknown 54.4
2289 Male, age 61, right hemisphere 52.5
Claustrum
nTPM: 53.9
2198 Male, age 80, both hemispheres 55.1
2196 Female, age 79, unknown 54.9
2491 Male, age 75, both hemispheres 54.8
1956 Male, age 74, unknown 54.2
2568 Male, age 61, both hemispheres 54.2
2392 Female, age 94, both hemispheres 53.7
2284 Female, age 91, both hemispheres 53.6
2645 Female, age 72, unknown 52.8
2292 Female, age 85, both hemispheres 51.7
Globus pallidus, externus
nTPM: 54.1
2772 Female, age 79, unknown 57.9
1996 Male, age 80, right hemisphere 55.6
2646 Male, age 61, right hemisphere 53.4
2395 Male, age 75, both hemispheres 53.2
2567 Female, age 72, unknown 50.2
Globus pallidus, internus
nTPM: 54.4
2287 Male, age 75, right hemisphere 57.2
1818 Male, age 74, unknown 56.3
2778 Female, age 91, both hemispheres 56.3
2483 Female, age 94, right hemisphere 54.9
2037 Male, age 80, right hemisphere 54.5
2111 Female, age 85, right hemisphere 50.7
2566 Female, age 72, unknown 50.6
Nucleus accumbens
nTPM: 54.9
1856 Female, age 91, right hemisphere 57.7
2286 Male, age 75, left hemisphere 56.0
1806 Female, age 85, left hemisphere 55.5
2698 Female, age 72, unknown 55.5
2391 Female, age 94, left hemisphere 55.0
1783 Male, age 74, unknown 54.4
2824 Male, age 61, right hemisphere 52.7
2732 Male, age 80, right hemisphere 52.5
Nucleus basalis of Meynert
nTPM: 53.8
2821 Male, age 75, both hemispheres 55.3
2393 Male, age 80, right hemisphere 54.0
2484 Female, age 94, left hemisphere 54.0
2569 Male, age 61, both hemispheres 52.0
Nucleus of the diagonal band
nTPM: 54.3
1812 Female, age 91, both hemispheres 56.2
2775 Male, age 80, right hemisphere 55.8
2195 Female, age 85, both hemispheres 54.7
2029 Male, age 61, right hemisphere 53.1
1979 Male, age 74, unknown 51.6
Olfactory tubercle
nTPM: 54.5
2856 Male, age 75, right hemisphere 55.1
1846 Male, age 80, right hemisphere 54.8
1998 Female, age 91, both hemispheres 54.8
2487 Female, age 94, left hemisphere 53.2
Putamen
nTPM: 54.7
2482 Female, age 94, left hemisphere 57.0
2466 Female, age 79, unknown 55.7
1838 Male, age 80, right hemisphere 55.3
1937 Female, age 91, right hemisphere 55.1
1829 Male, age 74, unknown 54.8
2647 Male, age 75, left hemisphere 53.0
2489 Female, age 72, unknown 51.9
Septal nuclei
nTPM: 53.2
1960 Male, age 74, unknown 55.3
2031 Female, age 72, unknown 55.2
2629 Female, age 94, right hemisphere 53.8
2009 Female, age 91, both hemispheres 52.8
2059 Female, age 85, both hemispheres 52.3
2199 Male, age 80, right hemisphere 51.6
2394 Male, age 61, left hemisphere 51.3

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 56.5
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 53.1
Samples: 246

Max nTPM: 120.0
Min nTPM: 30.2
Std nTPM: 13.3
Median nTPM: 50.3
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 120.0
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 109.0
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 101.5
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 100.7
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 95.4
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 95.2
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 90.9
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 89.6
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 87.2
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 84.6
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 78.9
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 51.6
Samples: 246

Max nTPM: 101.9
Min nTPM: 30.7
Std nTPM: 11.2
Median nTPM: 50.3
GTEX-147F4-0011-R6b-SM-5S2UP 50-59 years, male 101.9
GTEX-1IGQW-0011-R6a-SM-CM2TC 60-69 years, male 90.1
GTEX-1LVAO-0011-R6b-SM-EZ6MX 60-69 years, male 89.3
GTEX-1LC47-0011-R6b-SM-EZ6MI 60-69 years, male 83.0
GTEX-1J8Q2-0011-R6a-SM-CKZPG 60-69 years, male 81.9
GTEX-1LVA9-0011-R6a-SM-EYYWH 50-59 years, male 81.9
GTEX-1EKGG-0011-R6a-SM-CL538 60-69 years, male 78.7
GTEX-14753-0011-R6b-SM-5S2UD 60-69 years, male 76.9
GTEX-12WSF-0011-R6b-SM-5HL8W 70-79 years, male 74.6
GTEX-12WSH-0011-R6b-SM-5P9F4 50-59 years, male 73.0
GTEX-1HUB1-0011-R6b-SM-ARU6W 60-69 years, male 73.0
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Brain - Putamen (basal ganglia)
Average nTPM: 56.5
Samples: 205

Max nTPM: 101.6
Min nTPM: 30.1
Std nTPM: 11.7
Median nTPM: 54.4
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 101.6
GTEX-14E7W-0011-R7b-SM-5ZZV4 70-79 years, male 93.3
GTEX-11DZ1-0011-R7a-SM-DNZZH 50-59 years, male 90.5
GTEX-1J8Q2-0011-R7a-SM-CKZPF 60-69 years, male 89.6
GTEX-11DYG-0011-R7b-SM-EXUS6 60-69 years, male 86.5
GTEX-1HCVE-0011-R7b-SM-A9G1I 50-59 years, male 83.3
GTEX-1LSNL-0011-R7a-SM-EYYWI 50-59 years, male 83.1
GTEX-17EVP-0011-R7a-SM-7LTAN 40-49 years, male 82.4
GTEX-1ICLZ-0011-R7a-SM-ARZLU 60-69 years, male 80.2
GTEX-12WSA-0011-R7b-SM-5GU5U 60-69 years, male 78.7
GTEX-11PRG-0011-R7a-SM-DNZZT 50-59 years, male 76.9
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 44.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 39.5
FF:10164-103B2 76 years, female 39.5
Globus pallidus
Scaled Tags Per Million: 41.8
FF:10175-103C4 60 years, female 46.5
FF:10161-103A8 76 years, female 37.0
Nucleus accumbens
Scaled Tags Per Million: 43.8
FF:10037-101F1 23-56 years, mixed 43.8
Putamen
Scaled Tags Per Million: 44.9
FF:10176-103C5 60 years, female 44.9

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 54.5
Pig sample Sample description nTPM
Caudate
nTPM: 46.7
Samples: 4

Max nTPM: 60.3
Min nTPM: 36.2
Sample A Female 41.7
Sample B Female 48.7
Sample C Male 60.3
Sample D Male 36.2
Putamen
nTPM: 54.5
Samples: 4

Max nTPM: 72.5
Min nTPM: 45.0
Sample A Female 45.0
Sample B Female 45.9
Sample C Male 72.5
Sample D Male 54.6
Septum
nTPM: 48.9
Samples: 4

Max nTPM: 57.5
Min nTPM: 43.1
Sample A Female 49.6
Sample B Female 45.3
Sample C Male 57.5
Sample D Male 43.1
Ventral pallidum
nTPM: 47.6
Samples: 4

Max nTPM: 53.7
Min nTPM: 41.1
Sample A Female 44.7
Sample B Female 50.9
Sample C Male 53.7
Sample D Male 41.1

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 47.2
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 43.1
Samples: 4

Max nTPM: 45.6
Min nTPM: 39.6
Sample A Male 42.8
Sample B Male 45.6
Sample C Female 39.6
Sample D Female 44.4
Septum
nTPM: 47.3
Samples: 4

Max nTPM: 50.0
Min nTPM: 46.0
Sample A Male 46.5
Sample B Male 50.0
Sample C Female 46.5
Sample D Female 46.0
Ventral forebrain
nTPM: 44.4
Samples: 4

Max nTPM: 46.9
Min nTPM: 40.2
Sample A Male 43.6
Sample B Male 46.7
Sample C Female 46.9
Sample D Female 40.2

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 5.9
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 5.2
68545366 Antisense, RP_050118_03_C10, Mouse strain C57BL/6J (56 days, male) 5.2
Pallidum
Expression energy: 5.9
68545366 Antisense, RP_050118_03_C10, Mouse strain C57BL/6J (56 days, male) 5.9

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