MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:56.8 nTPM
HPA:56.8 nTPM
GTEx:58.5 nTPM
FANTOM5:35.8 Scaled Tags Per Million
Pig:61.6 nTPM
Mouse:54.5 nTPM
Allen mouse:8.2 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 56.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 53.7
2019 Male, age 18, unknown 56.3
1827 Male, age 72, unknown 55.5
2411 Female, age 72, unknown 55.4
2219 Male, age 76, both hemispheres 53.8
1870 Female, age 42, unknown 53.5
1833 Male, age 53, unknown 53.1
2666 Male, age 74, left hemisphere 53.0
2828 Female, age 72, unknown 52.7
2586 Male, age 75, left hemisphere 52.3
1830 Male, age 51, unknown 51.5
Dorsal raphe nucleus
nTPM: 54.0
2750 Male, age 76, both hemispheres 55.7
2298 Female, age 72, unknown 55.2
1828 Male, age 53, unknown 55.1
2047 Male, age 72, unknown 53.3
2016 Female, age 72, unknown 50.8
Inferior colliculus
nTPM: 53.3
2097 Female, age 72, unknown 54.4
1890 Male, age 53, unknown 53.7
2849 Male, age 72, unknown 52.7
1848 Female, age 42, unknown 52.4
Median raphe nucleus
nTPM: 56.0
2220 Male, age 76, midline 56.0
Pedunculopontine tegmental nucleus
nTPM: 55.6
2334 Male, age 80, both hemispheres 55.9
1921 Female, age 85, both hemispheres 55.7
2338 Male, age 61, both hemispheres 55.2
Periaquaductal grey, anterior
nTPM: 53.7
1795 Male, age 51, unknown 54.3
1947 Male, age 18, unknown 53.8
2502 Female, age 75, unknown 53.0
Periaquaductal grey, dorsal
nTPM: 51.9
1831 Male, age 72, unknown 52.4
2850 Male, age 76, both hemispheres 52.4
2464 Female, age 72, unknown 51.4
1840 Male, age 53, unknown 51.3
Periaquaductal grey, lateral
nTPM: 52.3
2272 Male, age 74, both hemispheres 53.9
2053 Male, age 18, unknown 51.9
2140 Male, age 76, both hemispheres 51.2
Pretectal area
nTPM: 55.9
1817 Female, age 42, unknown 61.1
1816 Male, age 51, unknown 60.1
2007 Male, age 72, unknown 60.0
1944 Female, age 72, unknown 58.9
2667 Female, age 75, unknown 57.0
1815 Male, age 53, unknown 56.8
2224 Female, age 72, unknown 53.2
2273 Male, age 74, both hemispheres 52.7
2316 Male, age 76, right hemisphere 52.3
2825 Male, age 18, unknown 51.7
2407 Male, age 75, both hemispheres 50.7
Red nucleus
nTPM: 54.6
1821 Female, age 72, unknown 56.9
2725 Female, age 75, unknown 56.5
2785 Male, age 18, unknown 56.2
1865 Male, age 51, unknown 54.9
2823 Male, age 76, right hemisphere 54.6
2588 Male, age 74, left hemisphere 54.3
2503 Female, age 72, unknown 54.2
1904 Male, age 53, unknown 53.9
1954 Female, age 42, unknown 53.6
2227 Male, age 72, unknown 53.5
2584 Male, age 75, left hemisphere 53.5
2769 Male, age 72, unknown 53.3
Substantia nigra
nTPM: 56.8
1916 Female, age 42, unknown 63.0
1889 Female, age 72, unknown 58.5
1941 Male, age 53, unknown 58.5
2409 Female, age 72, unknown 58.5
1851 Male, age 51, unknown 58.0
2241 Male, age 72, unknown 56.4
2699 Male, age 18, unknown 55.6
2665 Male, age 74, both hemispheres 55.0
2590 Female, age 75, unknown 52.9
2583 Male, age 75, right hemisphere 51.9
Superior colliculus
nTPM: 53.7
2087 Female, age 72, unknown 56.5
1895 Male, age 76, right hemisphere 55.5
2668 Female, age 75, unknown 54.7
2261 Male, age 18, unknown 54.6
1796 Male, age 53, unknown 54.5
2587 Male, age 74, left hemisphere 54.5
1913 Female, age 42, unknown 52.7
1839 Male, age 51, unknown 52.5
1995 Male, age 72, unknown 51.5
2664 Male, age 75, both hemispheres 49.9
Ventral tegmental area
nTPM: 55.3
2410 Female, age 72, unknown 58.0
2218 Male, age 76, both hemispheres 57.6
1915 Female, age 42, unknown 57.3
2223 Female, age 72, unknown 54.5
1942 Male, age 51, unknown 52.9
2021 Male, age 53, unknown 51.8

MIDBRAIN - GTEx RNA-seqi
Average nTPM 58.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 58.5
Samples: 139

Max nTPM: 100.7
Min nTPM: 29.7
Std nTPM: 13.3
Median nTPM: 55.9
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 100.7
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 98.7
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 94.5
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 92.1
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 90.9
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 88.0
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 86.5
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 81.8
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 80.3
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 79.3
GTEX-1E1VI-0011-R2a-SM-9QEGS 50-59 years, male 77.3
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 35.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 35.8
FF:10158-103A5 76 years, female 35.8

MIDBRAIN - Pig RNA-seqi
Average nTPM 61.6
Pig sample Sample description nTPM
Midbrain
nTPM: 61.6
Samples: 4

Max nTPM: 71.7
Min nTPM: 49.6
Sample A Female 49.6
Sample B Female 64.9
Sample C Male 71.7
Sample D Male 60.0
Periaqueductal gray
nTPM: 54.4
Samples: 3

Max nTPM: 63.3
Min nTPM: 45.3
Sample B Female 54.6
Sample C Male 63.3
Sample D Male 45.3
Substantia nigra
nTPM: 60.6
Samples: 4

Max nTPM: 79.5
Min nTPM: 38.5
Sample A Female 79.5
Sample B Female 45.4
Sample C Male 79.1
Sample D Male 38.5
Superior colliculi
nTPM: 59.1
Samples: 4

Max nTPM: 73.7
Min nTPM: 38.7
Sample A Female 73.7
Sample B Female 38.7
Sample C Male 65.0
Sample D Male 58.8

MIDBRAIN - Mouse RNA-seqi
Average nTPM 54.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 54.5
Samples: 4

Max nTPM: 57.8
Min nTPM: 51.7
Sample A Male 52.9
Sample B Male 55.6
Sample C Female 57.8
Sample D Female 51.7

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 8.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 8.2
68545366 Antisense, RP_050118_03_C10, Mouse strain C57BL/6J (56 days, male) 8.2

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.