MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:206.6 nTPM
HPA:206.6 nTPM
GTEx:173.0 nTPM
FANTOM5:432.4 Scaled Tags Per Million

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 206.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 160.9
2828 Female, age 72, unknown 191.3
2411 Female, age 72, unknown 188.1
2019 Male, age 18, unknown 170.5
1827 Male, age 72, unknown 170.1
1870 Female, age 42, unknown 159.2
1833 Male, age 53, unknown 154.8
2666 Male, age 74, left hemisphere 146.6
1830 Male, age 51, unknown 145.3
2219 Male, age 76, both hemispheres 141.8
2586 Male, age 75, left hemisphere 141.2
Dorsal raphe nucleus
nTPM: 191.2
2298 Female, age 72, unknown 244.7
2047 Male, age 72, unknown 191.9
1828 Male, age 53, unknown 189.6
2750 Male, age 76, both hemispheres 184.3
2016 Female, age 72, unknown 145.6
Inferior colliculus
nTPM: 129.8
2097 Female, age 72, unknown 156.4
1848 Female, age 42, unknown 128.8
1890 Male, age 53, unknown 128.3
2849 Male, age 72, unknown 105.9
Median raphe nucleus
nTPM: 180.3
2220 Male, age 76, midline 180.3
Pedunculopontine tegmental nucleus
nTPM: 176.5
2338 Male, age 61, both hemispheres 218.6
2334 Male, age 80, both hemispheres 173.1
1921 Female, age 85, both hemispheres 137.7
Periaquaductal grey, anterior
nTPM: 167.1
1947 Male, age 18, unknown 181.0
1795 Male, age 51, unknown 178.4
2502 Female, age 75, unknown 141.8
Periaquaductal grey, dorsal
nTPM: 130.3
1831 Male, age 72, unknown 139.6
2850 Male, age 76, both hemispheres 130.4
2464 Female, age 72, unknown 130.0
1840 Male, age 53, unknown 121.2
Periaquaductal grey, lateral
nTPM: 161.9
2272 Male, age 74, both hemispheres 214.1
2053 Male, age 18, unknown 140.3
2140 Male, age 76, both hemispheres 131.3
Pretectal area
nTPM: 170.2
2273 Male, age 74, both hemispheres 218.7
1817 Female, age 42, unknown 187.1
2007 Male, age 72, unknown 182.0
1816 Male, age 51, unknown 180.6
2224 Female, age 72, unknown 180.3
2667 Female, age 75, unknown 178.8
1815 Male, age 53, unknown 176.1
1944 Female, age 72, unknown 174.2
2825 Male, age 18, unknown 141.3
2407 Male, age 75, both hemispheres 131.0
2316 Male, age 76, right hemisphere 122.2
Red nucleus
nTPM: 171.6
2725 Female, age 75, unknown 208.2
1821 Female, age 72, unknown 190.3
2503 Female, age 72, unknown 184.7
1904 Male, age 53, unknown 178.7
2584 Male, age 75, left hemisphere 173.7
1954 Female, age 42, unknown 173.0
2823 Male, age 76, right hemisphere 169.9
1865 Male, age 51, unknown 169.5
2227 Male, age 72, unknown 168.5
2769 Male, age 72, unknown 168.4
2785 Male, age 18, unknown 166.8
2588 Male, age 74, left hemisphere 107.0
Substantia nigra
nTPM: 206.6
1916 Female, age 42, unknown 317.6
1851 Male, age 51, unknown 261.8
1941 Male, age 53, unknown 203.7
2699 Male, age 18, unknown 199.2
2409 Female, age 72, unknown 195.1
2241 Male, age 72, unknown 193.3
2590 Female, age 75, unknown 188.6
1889 Female, age 72, unknown 183.7
2583 Male, age 75, right hemisphere 168.7
2665 Male, age 74, both hemispheres 154.7
Superior colliculus
nTPM: 150.8
2261 Male, age 18, unknown 176.8
1796 Male, age 53, unknown 174.7
2587 Male, age 74, left hemisphere 174.1
2087 Female, age 72, unknown 172.0
1913 Female, age 42, unknown 155.9
1995 Male, age 72, unknown 152.6
2668 Female, age 75, unknown 143.0
1839 Male, age 51, unknown 128.1
1895 Male, age 76, right hemisphere 115.2
2664 Male, age 75, both hemispheres 115.2
Ventral tegmental area
nTPM: 201.2
2410 Female, age 72, unknown 249.6
1915 Female, age 42, unknown 241.1
2218 Male, age 76, both hemispheres 202.1
2223 Female, age 72, unknown 176.4
1942 Male, age 51, unknown 170.4
2021 Male, age 53, unknown 167.6

MIDBRAIN - GTEx RNA-seqi
Average nTPM 173.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 173.0
Samples: 139

Max nTPM: 433.0
Min nTPM: 58.3
Std nTPM: 73.1
Median nTPM: 155.9
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 433.0
GTEX-X585-0011-R2B-SM-46MVF 50-59 years, male 398.2
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 339.2
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 335.3
GTEX-11GSP-0011-R2b-SM-9QEGE 60-69 years, female 334.7
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 317.1
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 301.1
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 297.0
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 293.0
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 288.2
GTEX-1CB4G-0011-R2a-SM-9QEGQ 60-69 years, male 279.3
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 432.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 432.4
FF:10158-103A5 76 years, female 432.4

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The Human Protein Atlas

The Human Protein Atlas project is funded
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