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BRAIN THALAMUS Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Thalamus
THALAMUS - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:334.4 nTPM
HPA:334.4 nTPM
FANTOM5:254.9 Scaled Tags Per Million

THALAMUS - HPA Brain RNA-seq
Max nTPM 334.4
Sample id Sample description nTPM
Anterior thalamic nucleus, ventral
nTPM: 334.4
2396 Male, age 61, right hemisphere 679.9
2032 Female, age 42, unknown 181.1
2497 Male, age 66, unknown 142.3
Centromedial thalamic nucleus
nTPM: 187.4
2279 Female, age 85, left hemisphere 216.3
2401 Male, age 76, right hemisphere 158.4
Habenula
nTPM: 173.7
2276 Male, age 66, unknown 193.1
2252 Male, age 62, unknown 172.5
1957 Male, age 80, both hemispheres 165.3
2203 Male, age 61, left hemisphere 163.9
Lateral geniculate body
nTPM: 169.3
2106 Female, age 67, right hemisphere 201.9
2035 Female, age 72, unknown 198.9
2841 Male, age 80, both hemispheres 198.2
1953 Male, age 62, unknown 184.1
2575 Female, age 94, right hemisphere 175.0
2399 Male, age 61, left hemisphere 172.5
2659 Male, age 66, unknown 117.3
2857 Male, age 74, right hemisphere 106.2
Lateral thalamic nuclei
nTPM: 171.5
2573 Female, age 94, left hemisphere 210.4
2765 Female, age 67, both hemispheres 205.5
1903 Male, age 76, left hemisphere 155.1
2577 Male, age 74, both hemispheres 153.8
2661 Female, age 72, unknown 132.9
Medial dorsal thalamic nucleus
nTPM: 185.3
1971 Male, age 61, right hemisphere 288.6
2572 Female, age 94, right hemisphere 259.7
2498 Male, age 66, unknown 208.8
2492 Male, age 75, right hemisphere 199.1
1810 Male, age 48, unknown 193.3
1930 Female, age 42, unknown 182.0
2026 Male, age 62, unknown 179.0
1859 Male, age 76, both hemispheres 175.7
2402 Female, age 67, both hemispheres 167.2
2039 Female, age 72, unknown 155.4
2576 Male, age 74, both hemispheres 149.7
2283 Male, age 80, right hemisphere 142.6
2660 Female, age 72, unknown 108.5
Medial geniculate body
nTPM: 157.5
2650 Female, age 94, left hemisphere 212.5
2217 Female, age 72, unknown 168.0
1811 Female, age 42, unknown 162.7
2207 Male, age 80, right hemisphere 144.6
2049 Male, age 76, both hemispheres 141.9
2657 Male, age 74, right hemisphere 140.8
2571 Male, age 75, right hemisphere 132.2
Nucleus reuniens
nTPM: 170.1
2212 Female, age 67, left hemisphere 181.8
2210 Female, age 85, left hemisphere 170.4
2205 Male, age 80, left hemisphere 158.2
Nucleus rhomboideus
nTPM: 183.9
2213 Female, age 67, left hemisphere 211.6
2280 Female, age 85, left hemisphere 177.0
2206 Male, age 80, both hemispheres 163.2
Posterior thalamic nucleus
nTPM: 156.6
2649 Female, age 94, both hemispheres 213.9
2266 Male, age 76, right hemisphere 164.0
2495 Female, age 67, right hemisphere 144.8
2655 Male, age 74, right hemisphere 103.5
Pulvinar
nTPM: 164.2
1972 Male, age 62, unknown 191.2
2398 Male, age 61, left hemisphere 189.6
2499 Male, age 66, unknown 185.3
1899 Female, age 42, unknown 176.5
1932 Male, age 80, right hemisphere 172.7
1929 Male, age 48, unknown 168.8
2582 Female, age 72, unknown 160.1
2214 Male, age 76, right hemisphere 155.3
2496 Female, age 67, right hemisphere 141.9
2724 Male, age 74, right hemisphere 100.5
Subthalamic nucleus
nTPM: 176.2
2658 Male, age 74, both hemispheres 203.7
2275 Male, age 66, unknown 202.6
2124 Male, age 62, unknown 197.4
2282 Male, age 61, both hemispheres 174.9
2406 Female, age 72, unknown 171.4
2056 Female, age 72, unknown 163.0
2779 Female, age 42, unknown 163.0
2216 Male, age 48, unknown 133.4
Ventral posterolateral thalamic nucleus
nTPM: 167.7
2397 Male, age 61, right hemisphere 260.0
2740 Male, age 76, right hemisphere 178.6
2570 Male, age 75, right hemisphere 171.6
2197 Male, age 80, both hemispheres 155.6
2578 Male, age 74, both hemispheres 146.3
2581 Female, age 72, unknown 94.1
Ventral posteromedial thalamic nucleus
nTPM: 177.0
2202 Male, age 61, left hemisphere 229.1
2281 Male, age 75, right hemisphere 194.5
2127 Male, age 76, right hemisphere 160.5
2653 Male, age 74, both hemispheres 156.5
2758 Male, age 80, both hemispheres 144.4
Ventral thalamic nuclei
nTPM: 161.3
1845 Male, age 48, unknown 187.0
2291 Female, age 72, unknown 172.6
2285 Male, age 62, unknown 171.3
1860 Male, age 76, both hemispheres 170.9
2204 Male, age 80, both hemispheres 161.5
1912 Female, age 42, unknown 160.9
2580 Male, age 66, unknown 159.9
2652 Male, age 74, left hemisphere 135.5
2858 Female, age 72, unknown 131.6
Ventromedial nucleus
nTPM: 120.7
1982 Female, age 72, unknown 128.8
1822 Female, age 42, unknown 112.6
Zona incerta
nTPM: 152.9
2215 Male, age 66, unknown 203.8
2822 Male, age 74, right hemisphere 189.9
2208 Male, age 80, right hemisphere 138.1
2403 Male, age 62, unknown 130.6
2663 Female, age 72, unknown 102.1

THALAMUS - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 254.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Thalamus
Scaled Tags Per Million: 254.9
FF:10154-103A1 76 years, female 254.9

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