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RNF146
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BRAIN SUBSTANTIA NIGRA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
SUBSTANTIA NIGRA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
HPA:49.1 nTPM
GTEx:50.2 nTPM
FANTOM5:89.1 Scaled Tags Per Million
Pig:84.2 nTPM

SUBSTANTIA NIGRA - HPA Brain RNA-seq
Avg nTPM 49.1
Sample id Sample description nTPM
Substantia nigra
nTPM: 49.1
2583 Male, age 75, right hemisphere 51.8
2590 Female, age 75, unknown 50.4
1889 Female, age 72, unknown 50.3
2665 Male, age 74, both hemispheres 49.7
1851 Male, age 51, unknown 48.8
1941 Male, age 53, unknown 48.4
2699 Male, age 18, unknown 48.3
2409 Female, age 72, unknown 48.1
1916 Female, age 42, unknown 47.9
2241 Male, age 72, unknown 47.9

SUBSTANTIA NIGRA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 50.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 50.2
Samples: 139

Max nTPM: 83.3
Min nTPM: 30.5
Std nTPM: 9.7
Median nTPM: 48.3
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 83.3
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 79.0
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 77.9
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 76.1
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 74.4
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 74.1
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 70.6
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 70.4
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 68.9
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 68.3
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 67.9
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 66.2
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 65.0
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 64.4
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 62.9
GTEX-11UD1-0011-R2b-SM-5BC6O 40-49 years, female 62.7
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 61.9
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 61.2
GTEX-131XH-0011-R2b-SM-5DUVY 50-59 years, male 59.6
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 59.6
GTEX-1I1CD-0011-R2a-SM-CM2T3 60-69 years, female 59.2
GTEX-1C6VR-0011-R2a-SM-7RHGZ 60-69 years, male 59.0
GTEX-18464-0011-R2a-SM-731AL 50-59 years, male 58.7
GTEX-11ZTS-0011-R2b-SM-5BC75 60-69 years, female 58.4
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 58.3
GTEX-1GTWX-0011-R2b-SM-ADEH5 60-69 years, male 57.9
GTEX-1HR98-0011-R2a-SM-ARL7A 60-69 years, male 57.0
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 56.8
GTEX-11EMC-0011-R2b-SM-DO114 60-69 years, female 56.5
GTEX-132Q8-0011-R2b-SM-5EQ5Z 60-69 years, male 55.4
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 55.0
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 54.9
GTEX-QMR6-0011-R2A-SM-32PKV 50-59 years, male 54.6
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 54.5
GTEX-1F6IF-0011-R2b-SM-9QEHB 60-69 years, male 54.4
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 54.4
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 54.2
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 54.1
GTEX-T5JC-0011-R2A-SM-32PLZ 20-29 years, male 53.7
GTEX-17HG3-0011-R2a-SM-7MGVX 30-39 years, female 53.7
GTEX-T2IS-0011-R2A-SM-32QPF 20-29 years, female 53.5
GTEX-17EVP-0011-R2a-SM-7LG4W 40-49 years, male 53.2
GTEX-OHPN-0011-R2A-SM-2I5FB 60-69 years, female 53.0
GTEX-1E1VI-0011-R2a-SM-9QEGS 50-59 years, male 52.8
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 52.3
GTEX-13X6I-0011-R2b-SM-5PNWQ 60-69 years, male 52.0
GTEX-11WQC-0011-R2a-SM-DO927 60-69 years, male 51.8
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 51.7
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 51.6
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 51.3
GTEX-1F48J-0011-R2a-SM-CL535 50-59 years, female 51.0
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 50.8
GTEX-13CF2-0011-R2a-SM-5L3DC 60-69 years, male 50.7
GTEX-1EU9M-0011-R2b-SM-9QEH7 60-69 years, male 50.4
GTEX-14ASI-0011-R2b-SM-5YY9H 60-69 years, male 50.2
GTEX-1H3O1-0011-R2b-SM-CKZOT 60-69 years, male 50.2
GTEX-1IL2U-0011-R2a-SM-ARU6V 60-69 years, male 50.2
GTEX-1LSNL-0011-R2a-SM-EZ6MK 50-59 years, male 50.1
GTEX-13QJC-0011-R2b-SM-5PNUN 60-69 years, female 49.9
GTEX-15RJE-0011-R2b-SM-79OMP 40-49 years, male 49.9
GTEX-1I1GV-0011-R2a-SM-ARZLF 60-69 years, male 49.8
GTEX-1IKJJ-0011-R2b-SM-ARZLJ 60-69 years, male 49.8
GTEX-14JG1-0011-R2a-SM-5ZZVE 40-49 years, male 49.7
GTEX-1HFI6-0011-R2a-SM-CMKH5 40-49 years, male 49.6
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 49.2
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 49.1
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 48.8
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 48.7
GTEX-S7SE-0011-R2A-SM-2XCDC 50-59 years, male 48.4
GTEX-PWO3-0011-R2A-SM-2S1OX 60-69 years, female 48.3
GTEX-YFC4-0011-R2a-SM-4V6DZ 40-49 years, female 48.2
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 47.9
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 47.9
GTEX-14PJO-0011-R2a-SM-5ZZVF 60-69 years, male 47.8
GTEX-11PRG-0011-R2a-SM-69LQ5 50-59 years, male 47.6
GTEX-1GMR8-0011-R2a-SM-CE6RD 50-59 years, female 47.6
GTEX-13O3O-0011-R2b-SM-5P9H1 60-69 years, female 47.5
GTEX-13SLX-0011-R2b-SM-5S2VP 50-59 years, female 47.4
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 47.1
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 47.0
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 46.9
GTEX-16Z82-0011-R2b-SM-79OK9 60-69 years, male 46.7
GTEX-11GSO-0011-R2a-SM-57WDF 60-69 years, male 46.5
GTEX-RU72-0011-R2A-SM-2TF6O 50-59 years, female 46.5
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 46.5
GTEX-N7MS-0011-R2a-SM-2HML6 60-69 years, male 46.2
GTEX-13FXS-0011-R2b-SM-5K7XX 50-59 years, male 46.1
GTEX-XMD1-0011-R2B-SM-4AT5N 60-69 years, male 46.0
GTEX-1445S-0011-R2b-SM-5PNUH 60-69 years, male 45.9
GTEX-14C5O-0011-R2a-SM-5ZZV2 60-69 years, male 45.8
GTEX-1F6I4-0011-R2a-SM-CL536 60-69 years, male 45.8
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 45.7
GTEX-1A3MX-0011-R2b-SM-7EWFL 60-69 years, male 45.4
GTEX-147GR-0011-R2b-SM-5S2RQ 60-69 years, male 45.3
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 45.3
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 45.1
GTEX-P44G-0011-R2A-SM-2XCD2 30-39 years, male 45.0
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 44.8
GTEX-T6MN-0011-R2A-SM-32QOW 50-59 years, male 44.7
GTEX-1CB4G-0011-R2a-SM-9QEGQ 60-69 years, male 44.7
GTEX-13N2G-0011-R2a-SM-5MR4Q 60-69 years, male 44.6
GTEX-1B8SG-0011-R2b-SM-79OOT 50-59 years, male 44.6
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 44.6
GTEX-13G51-0011-R2b-SM-5LZXS 60-69 years, male 44.4
GTEX-13RTJ-0011-R2a-SM-5PNW9 60-69 years, male 44.2
GTEX-14PN4-0011-R2a-SM-6EU2Y 50-59 years, male 43.7
GTEX-XLM4-0011-R2B-SM-4AT5Z 60-69 years, male 43.5
GTEX-11GSP-0011-R2b-SM-9QEGE 60-69 years, female 43.5
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 43.4
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 43.2
GTEX-X585-0011-R2B-SM-46MVF 50-59 years, male 43.0
GTEX-15DCD-0011-R2b-SM-6LPIE 70-79 years, female 42.7
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 42.6
GTEX-1EKGG-0011-R2a-SM-CE6R8 60-69 years, male 42.5
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 42.1
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 41.6
GTEX-15CHQ-0011-R2b-SM-6AJAD 60-69 years, male 41.5
GTEX-15DYW-0011-R2b-SM-7KUKY 60-69 years, female 41.1
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 40.5
GTEX-145LS-0011-R2a-SM-5PNZI 60-69 years, female 39.8
GTEX-14BIN-0011-R2a-SM-5S2RJ 50-59 years, female 39.7
GTEX-1B996-0011-R2a-SM-7IGON 60-69 years, male 39.7
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 39.6
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 39.4
GTEX-NL4W-0011-R2a-SM-2I5GV 50-59 years, male 39.3
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 39.3
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 39.2
GTEX-12WSF-0011-R2a-SM-5DUVU 70-79 years, male 39.1
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 39.0
GTEX-NPJ8-0011-R2a-SM-2TC6M 40-49 years, male 38.4
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 38.1
GTEX-WHSE-0011-R2A-SM-3P5ZL 20-29 years, male 37.7
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 37.7
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 37.5
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 37.3
GTEX-13OW8-0011-R2a-SM-5L3G2 60-69 years, male 36.5
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 36.1
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 36.0
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 30.5
Show allShow less

SUBSTANTIA NIGRA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 89.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 89.1
FF:10158-103A5 76 years, female 89.1

SUBSTANTIA NIGRA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 84.2
Pig sample Sample description nTPM
Substantia nigra
nTPM: 84.2
Samples: 4

Max nTPM: 111.8
Min nTPM: 71.8
Sample A Female 111.8
Sample B Female 76.7
Sample C Male 76.4
Sample D Male 71.8

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