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NPC2
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TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM ENDOMETRIUM
EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MEDULLA OBLONGATA MIDBRAIN NASOPHARYNX ORAL MUCOSA
OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PONS PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE SMOOTH MUSCLE
SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THALAMUS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA WHITE MATTER
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
h
m
l
n
Glial cells: Not detected
Neuronal cells: Low
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
GTEx:97.1 nTPM
FANTOM5:79.3 Scaled Tags Per Million
Pig:37.6 nTPM

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Read more
Antibody HPA000835Antibody CAB032888
Glial cells Not detectedNot detected
Neuronal cells Not detectedLow



CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 97.1
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 97.1
Samples: 246

Max nTPM: 258.1
Min nTPM: 28.3
Std nTPM: 31.6
Median nTPM: 93.0
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 258.1
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 225.3
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 201.6
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 195.3
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 185.9
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 184.1
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 184.0
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 180.0
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 164.7
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 160.7
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 153.1
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 152.6
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 152.2
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 152.0
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 151.9
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 145.4
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 143.6
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 140.1
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 138.5
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 138.3
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 137.9
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 133.5
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 132.0
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 131.5
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 131.5
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 130.8
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 130.4
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 130.1
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 129.4
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 129.2
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 129.2
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 128.8
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 128.5
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 128.4
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 127.7
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 127.4
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 127.1
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 127.1
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 125.8
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 125.3
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 124.2
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 124.1
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 123.6
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 121.0
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 120.6
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 119.4
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 119.1
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 119.1
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 118.4
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 117.2
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 117.0
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 116.7
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 116.5
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 116.0
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 114.4
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 114.1
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 113.8
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 113.4
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 113.1
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 112.8
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 112.8
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 112.5
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 112.4
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 112.2
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 110.9
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 110.0
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 109.6
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 109.6
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 108.8
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 108.7
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 108.0
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 107.9
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 107.2
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 106.4
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 106.1
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 106.1
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 106.1
GTEX-RVPV-0011-R5A-SM-2TF69 60-69 years, male 105.4
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 105.4
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 105.3
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 105.1
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 105.1
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 104.3
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 104.1
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 104.1
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 104.0
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 103.8
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 103.8
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 103.5
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 103.4
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 103.3
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 103.1
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 103.0
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 102.7
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 102.0
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 101.6
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 101.3
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 101.1
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 101.1
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 100.8
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 100.7
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 100.5
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 99.8
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 98.9
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 98.6
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 98.4
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 98.3
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 97.8
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 97.2
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 96.5
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 96.4
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 96.0
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 95.9
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 95.9
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 95.2
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 94.9
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 94.8
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 94.3
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 94.2
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 94.1
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 94.0
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 93.5
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 93.4
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 92.6
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 92.4
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 91.9
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 91.3
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 91.3
GTEX-OXRN-0011-R5A-SM-2I5EF 50-59 years, male 90.8
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 90.7
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 90.4
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 89.8
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 89.5
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 89.2
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 88.6
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 88.5
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 88.2
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 88.2
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 88.1
GTEX-N7MT-0011-R5a-SM-2I3G6 60-69 years, female 88.0
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 87.8
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 87.8
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 87.2
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 86.4
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 86.1
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 85.7
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 85.4
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 85.3
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 85.3
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 85.2
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 85.1
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 85.1
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 85.0
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 84.8
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 84.4
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 83.6
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 83.5
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 83.4
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 83.3
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 82.8
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 82.5
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 82.5
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 82.4
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 82.2
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 82.0
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 81.7
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 81.2
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 81.0
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 80.9
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 80.6
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 80.6
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 80.4
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 80.4
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 80.2
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 79.9
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 79.0
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 78.2
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 78.2
GTEX-RU72-0011-R5A-SM-2TF6U 50-59 years, female 78.2
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 78.0
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 77.9
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 77.9
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 77.7
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 77.4
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 77.2
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 76.0
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 75.7
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 74.7
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 74.2
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 73.9
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 73.7
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 73.5
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 73.5
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 73.0
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 72.6
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 71.5
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 71.4
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 71.4
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 71.2
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 71.0
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 70.6
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 70.4
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 70.0
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 69.2
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 69.2
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 69.0
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 69.0
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 68.1
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 67.4
GTEX-R55E-0011-R5A-SM-2TC5N 20-29 years, male 67.3
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 66.8
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 66.1
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 65.7
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 65.6
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 64.0
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 63.6
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 63.6
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 62.8
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 62.7
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 62.4
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 62.1
GTEX-P44G-0011-R5A-SM-2I3FA 30-39 years, male 61.2
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 60.9
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 60.7
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 60.2
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 59.2
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 59.1
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 58.8
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 58.4
GTEX-18464-0011-R5b-SM-718A6 50-59 years, male 58.3
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 57.1
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 57.0
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 56.9
GTEX-S7SE-0011-R5A-SM-2XCDA 50-59 years, male 56.6
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 56.3
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 56.1
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 55.6
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 53.3
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 53.2
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 52.0
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 52.0
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 51.3
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 47.3
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 46.6
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 45.4
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 28.3
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 79.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 79.3
FF:10164-103B2 76 years, female 79.3

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 37.6
Pig sample Sample description nTPM
Caudate
nTPM: 37.6
Samples: 4

Max nTPM: 42.7
Min nTPM: 31.3
Sample A Female 42.7
Sample B Female 35.8
Sample C Male 40.6
Sample D Male 31.3

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