BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Medium
Neuronal cells: Medium
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:65.6 nTPM
HPA:65.6 nTPM
GTEx:60.9 nTPM
FANTOM5:146.8 Scaled Tags Per Million
Pig:22.7 nTPM
Mouse:107.0 nTPM
Allen mouse:0.2 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA042809
Glial cells Medium
Neuronal cells Medium



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 65.6
Sample id Sample description nTPM
Caudate nucleus
nTPM: 57.2
2288 Male, age 75, left hemisphere 60.8
2481 Female, age 94, left hemisphere 59.7
2846 Female, age 79, unknown 59.2
1781 Male, age 74, unknown 58.8
2290 Female, age 72, unknown 57.7
1857 Female, age 85, left hemisphere 57.5
1854 Male, age 80, left hemisphere 55.8
2289 Male, age 61, right hemisphere 47.8
Claustrum
nTPM: 58.3
2392 Female, age 94, both hemispheres 63.6
2198 Male, age 80, both hemispheres 62.7
2284 Female, age 91, both hemispheres 61.9
2491 Male, age 75, both hemispheres 59.1
2568 Male, age 61, both hemispheres 59.1
1956 Male, age 74, unknown 57.6
2196 Female, age 79, unknown 54.7
2292 Female, age 85, both hemispheres 53.2
2645 Female, age 72, unknown 53.1
Globus pallidus, externus
nTPM: 51.0
2395 Male, age 75, both hemispheres 60.2
2772 Female, age 79, unknown 56.6
1996 Male, age 80, right hemisphere 52.1
2567 Female, age 72, unknown 43.9
2646 Male, age 61, right hemisphere 42.5
Globus pallidus, internus
nTPM: 52.2
2287 Male, age 75, right hemisphere 58.8
1818 Male, age 74, unknown 54.7
2483 Female, age 94, right hemisphere 54.4
2778 Female, age 91, both hemispheres 53.2
2037 Male, age 80, right hemisphere 51.4
2566 Female, age 72, unknown 46.6
2111 Female, age 85, right hemisphere 46.5
Nucleus accumbens
nTPM: 57.6
1856 Female, age 91, right hemisphere 64.7
2286 Male, age 75, left hemisphere 61.5
2824 Male, age 61, right hemisphere 57.5
1806 Female, age 85, left hemisphere 57.2
1783 Male, age 74, unknown 56.9
2698 Female, age 72, unknown 56.9
2391 Female, age 94, left hemisphere 56.8
2732 Male, age 80, right hemisphere 49.2
Nucleus basalis of Meynert
nTPM: 51.4
2393 Male, age 80, right hemisphere 56.1
2821 Male, age 75, both hemispheres 54.3
2484 Female, age 94, left hemisphere 52.8
2569 Male, age 61, both hemispheres 42.6
Nucleus of the diagonal band
nTPM: 65.6
1812 Female, age 91, both hemispheres 73.3
2029 Male, age 61, right hemisphere 72.1
2775 Male, age 80, right hemisphere 68.1
2195 Female, age 85, both hemispheres 61.6
1979 Male, age 74, unknown 52.8
Olfactory tubercle
nTPM: 64.7
1998 Female, age 91, both hemispheres 70.4
1846 Male, age 80, right hemisphere 66.6
2487 Female, age 94, left hemisphere 62.8
2856 Male, age 75, right hemisphere 58.9
Putamen
nTPM: 55.8
1937 Female, age 91, right hemisphere 61.2
1838 Male, age 80, right hemisphere 59.7
2466 Female, age 79, unknown 57.9
1829 Male, age 74, unknown 57.6
2482 Female, age 94, left hemisphere 57.3
2647 Male, age 75, left hemisphere 50.4
2489 Female, age 72, unknown 46.5
Septal nuclei
nTPM: 59.6
2031 Female, age 72, unknown 75.6
2009 Female, age 91, both hemispheres 66.0
2629 Female, age 94, right hemisphere 63.4
1960 Male, age 74, unknown 61.5
2394 Male, age 61, left hemisphere 51.2
2059 Female, age 85, both hemispheres 50.7
2199 Male, age 80, right hemisphere 49.3

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 60.9
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 58.3
Samples: 246

Max nTPM: 133.2
Min nTPM: 33.5
Std nTPM: 15.1
Median nTPM: 55.6
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 133.2
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 111.3
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 109.8
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 105.2
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 102.6
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 102.5
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 92.2
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 91.1
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 90.6
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 89.8
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 88.2
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 60.9
Samples: 246

Max nTPM: 105.4
Min nTPM: 34.5
Std nTPM: 13.2
Median nTPM: 60.7
GTEX-1LVAO-0011-R6b-SM-EZ6MX 60-69 years, male 105.4
GTEX-1B8L1-0011-R6b-SM-7P8SU 60-69 years, male 94.5
GTEX-1A3MX-0011-R6a-SM-7P8S9 60-69 years, male 93.4
GTEX-1HT8W-0011-R6a-SM-CM2SY 30-39 years, male 89.6
GTEX-1EKGG-0011-R6a-SM-CL538 60-69 years, male 89.0
GTEX-11NV4-0011-R6a-SM-57WD5 60-69 years, male 86.9
GTEX-13X6J-0011-R6a-SM-5PNUB 50-59 years, male 86.1
GTEX-Z93S-0011-R6b-SM-4RGNJ 50-59 years, male 85.4
GTEX-11OF3-0011-R6b-SM-57WBG 60-69 years, male 85.0
GTEX-131XH-0011-R6a-SM-5KM2G 50-59 years, male 84.9
GTEX-147F4-0011-R6b-SM-5S2UP 50-59 years, male 84.4
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Brain - Putamen (basal ganglia)
Average nTPM: 55.7
Samples: 205

Max nTPM: 119.4
Min nTPM: 26.3
Std nTPM: 13.4
Median nTPM: 53.1
GTEX-16YQH-0011-R7a-SM-79ON1 30-39 years, male 119.4
GTEX-Z93S-0011-R7b-SM-4RGNK 50-59 years, male 90.7
GTEX-1C6WA-0011-R7b-SM-7P8S8 60-69 years, male 90.6
GTEX-12WSI-0011-R7b-SM-5GU78 50-59 years, male 88.4
GTEX-T5JC-0011-R7A-SM-32PME 20-29 years, male 86.9
GTEX-14C5O-0011-R7b-SM-5YYAH 60-69 years, male 84.8
GTEX-11PRG-0011-R7a-SM-DNZZT 50-59 years, male 84.6
GTEX-RNOR-0011-R7A-SM-2TF4V 50-59 years, female 84.2
GTEX-1EMGI-0011-R7b-SM-9QEH5 60-69 years, male 83.8
GTEX-1HFI6-0011-R7b-SM-CM2SS 40-49 years, male 83.3
GTEX-1IY9M-0011-R7a-SM-D4P49 60-69 years, male 82.6
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 146.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 107.4
FF:10164-103B2 76 years, female 107.4
Globus pallidus
Scaled Tags Per Million: 102.7
FF:10175-103C4 60 years, female 126.2
FF:10161-103A8 76 years, female 79.1
Nucleus accumbens
Scaled Tags Per Million: 145.4
FF:10037-101F1 23-56 years, mixed 145.4
Putamen
Scaled Tags Per Million: 146.8
FF:10176-103C5 60 years, female 146.8

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 22.7
Pig sample Sample description nTPM
Caudate
nTPM: 20.9
Samples: 4

Max nTPM: 22.3
Min nTPM: 20.0
Sample A Female 22.3
Sample B Female 20.6
Sample C Male 20.6
Sample D Male 20.0
Putamen
nTPM: 21.5
Samples: 4

Max nTPM: 23.1
Min nTPM: 18.8
Sample A Female 23.0
Sample B Female 21.0
Sample C Male 23.1
Sample D Male 18.8
Septum
nTPM: 22.7
Samples: 4

Max nTPM: 23.8
Min nTPM: 21.0
Sample A Female 23.5
Sample B Female 23.8
Sample C Male 22.6
Sample D Male 21.0
Ventral pallidum
nTPM: 22.5
Samples: 4

Max nTPM: 23.2
Min nTPM: 21.4
Sample A Female 23.2
Sample B Female 23.0
Sample C Male 22.4
Sample D Male 21.4

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 107.0
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 100.0
Samples: 4

Max nTPM: 113.1
Min nTPM: 91.9
Sample A Male 113.1
Sample B Male 92.4
Sample C Female 102.4
Sample D Female 91.9
Septum
nTPM: 73.2
Samples: 4

Max nTPM: 76.4
Min nTPM: 68.8
Sample A Male 76.4
Sample B Male 72.0
Sample C Female 68.8
Sample D Female 75.7
Ventral forebrain
nTPM: 107.0
Samples: 4

Max nTPM: 111.9
Min nTPM: 101.5
Sample A Male 110.9
Sample B Male 103.7
Sample C Female 101.5
Sample D Female 111.9

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.2
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.2
70195084 Antisense, RP_050517_02_D02, Mouse strain C57BL/6J (56 days, male) 0.2
Pallidum
Expression energy: 0.1
70195084 Antisense, RP_050517_02_D02, Mouse strain C57BL/6J (56 days, male) 0.1

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