MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:57.2 nTPM
HPA:57.2 nTPM
GTEx:58.3 nTPM
FANTOM5:102.6 Scaled Tags Per Million
Pig:23.0 nTPM
Mouse:104.9 nTPM
Allen mouse:0.4 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 57.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 53.9
2019 Male, age 18, unknown 59.3
2411 Female, age 72, unknown 59.3
1827 Male, age 72, unknown 55.7
1870 Female, age 42, unknown 54.9
1833 Male, age 53, unknown 53.3
1830 Male, age 51, unknown 53.2
2586 Male, age 75, left hemisphere 51.3
2219 Male, age 76, both hemispheres 50.8
2666 Male, age 74, left hemisphere 50.4
2828 Female, age 72, unknown 50.2
Dorsal raphe nucleus
nTPM: 57.2
2298 Female, age 72, unknown 61.6
2047 Male, age 72, unknown 59.1
1828 Male, age 53, unknown 58.3
2750 Male, age 76, both hemispheres 53.8
2016 Female, age 72, unknown 53.0
Inferior colliculus
nTPM: 56.1
2097 Female, age 72, unknown 60.0
1848 Female, age 42, unknown 57.6
1890 Male, age 53, unknown 53.8
2849 Male, age 72, unknown 53.2
Median raphe nucleus
nTPM: 56.0
2220 Male, age 76, midline 56.0
Pedunculopontine tegmental nucleus
nTPM: 57.0
2334 Male, age 80, both hemispheres 59.5
1921 Female, age 85, both hemispheres 58.3
2338 Male, age 61, both hemispheres 53.1
Periaquaductal grey, anterior
nTPM: 53.1
1947 Male, age 18, unknown 54.6
2502 Female, age 75, unknown 53.7
1795 Male, age 51, unknown 50.9
Periaquaductal grey, dorsal
nTPM: 53.3
1840 Male, age 53, unknown 55.3
2850 Male, age 76, both hemispheres 54.4
2464 Female, age 72, unknown 53.0
1831 Male, age 72, unknown 50.7
Periaquaductal grey, lateral
nTPM: 54.5
2272 Male, age 74, both hemispheres 59.8
2053 Male, age 18, unknown 52.5
2140 Male, age 76, both hemispheres 51.3
Pretectal area
nTPM: 56.4
1816 Male, age 51, unknown 61.1
1817 Female, age 42, unknown 60.9
2273 Male, age 74, both hemispheres 60.6
1944 Female, age 72, unknown 59.4
2007 Male, age 72, unknown 59.1
2224 Female, age 72, unknown 56.3
2667 Female, age 75, unknown 56.2
1815 Male, age 53, unknown 54.9
2825 Male, age 18, unknown 52.3
2407 Male, age 75, both hemispheres 49.9
2316 Male, age 76, right hemisphere 49.8
Red nucleus
nTPM: 53.9
1821 Female, age 72, unknown 63.0
1954 Female, age 42, unknown 57.3
2785 Male, age 18, unknown 54.5
2725 Female, age 75, unknown 54.1
2769 Male, age 72, unknown 53.6
2503 Female, age 72, unknown 53.5
1865 Male, age 51, unknown 53.4
1904 Male, age 53, unknown 53.1
2227 Male, age 72, unknown 53.1
2588 Male, age 74, left hemisphere 51.3
2823 Male, age 76, right hemisphere 50.7
2584 Male, age 75, left hemisphere 48.9
Substantia nigra
nTPM: 56.6
1916 Female, age 42, unknown 61.2
1889 Female, age 72, unknown 61.1
2241 Male, age 72, unknown 60.5
1941 Male, age 53, unknown 60.2
1851 Male, age 51, unknown 57.7
2590 Female, age 75, unknown 55.1
2409 Female, age 72, unknown 54.9
2699 Male, age 18, unknown 52.7
2583 Male, age 75, right hemisphere 51.6
2665 Male, age 74, both hemispheres 50.8
Superior colliculus
nTPM: 53.6
1895 Male, age 76, right hemisphere 57.1
2587 Male, age 74, left hemisphere 56.0
2087 Female, age 72, unknown 55.1
2261 Male, age 18, unknown 55.0
1839 Male, age 51, unknown 53.8
2668 Female, age 75, unknown 53.3
1796 Male, age 53, unknown 52.4
2664 Male, age 75, both hemispheres 51.9
1913 Female, age 42, unknown 50.9
1995 Male, age 72, unknown 50.0
Ventral tegmental area
nTPM: 54.7
2410 Female, age 72, unknown 59.3
1915 Female, age 42, unknown 56.4
2218 Male, age 76, both hemispheres 53.6
2223 Female, age 72, unknown 53.4
2021 Male, age 53, unknown 53.3
1942 Male, age 51, unknown 51.9

MIDBRAIN - GTEx RNA-seqi
Average nTPM 58.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 58.3
Samples: 139

Max nTPM: 125.3
Min nTPM: 34.6
Std nTPM: 12.7
Median nTPM: 55.8
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 125.3
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 100.4
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 96.8
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 95.8
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 94.7
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 91.0
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 87.1
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 79.4
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 77.0
GTEX-1HFI6-0011-R2a-SM-CMKH5 40-49 years, male 75.9
GTEX-RU72-0011-R2A-SM-2TF6O 50-59 years, female 75.2
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 102.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 102.6
FF:10158-103A5 76 years, female 102.6

MIDBRAIN - Pig RNA-seqi
Average nTPM 23.0
Pig sample Sample description nTPM
Midbrain
nTPM: 22.0
Samples: 4

Max nTPM: 23.5
Min nTPM: 20.7
Sample A Female 20.7
Sample B Female 23.5
Sample C Male 21.2
Sample D Male 22.5
Periaqueductal gray
nTPM: 23.0
Samples: 3

Max nTPM: 23.6
Min nTPM: 22.5
Sample B Female 23.6
Sample C Male 22.9
Sample D Male 22.5
Substantia nigra
nTPM: 21.9
Samples: 4

Max nTPM: 24.1
Min nTPM: 20.5
Sample A Female 24.1
Sample B Female 21.4
Sample C Male 21.6
Sample D Male 20.5
Superior colliculi
nTPM: 22.6
Samples: 4

Max nTPM: 23.9
Min nTPM: 20.3
Sample A Female 23.3
Sample B Female 23.9
Sample C Male 23.0
Sample D Male 20.3

MIDBRAIN - Mouse RNA-seqi
Average nTPM 104.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 104.9
Samples: 4

Max nTPM: 108.8
Min nTPM: 102.0
Sample A Male 106.5
Sample B Male 102.0
Sample C Female 102.1
Sample D Female 108.8

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.4
70195084 Antisense, RP_050517_02_D02, Mouse strain C57BL/6J (56 days, male) 0.4

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The Human Protein Atlas

The Human Protein Atlas project is funded
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