BASAL GANGLIA - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:85.8 nTPM
HPA:85.8 nTPM
GTEx:91.3 nTPM
FANTOM5:131.9 Scaled Tags Per Million
Pig:34.6 nTPM
Mouse:23.5 nTPM
Allen mouse:2.6 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 85.8
Sample id Sample description nTPM
Caudate nucleus
nTPM: 71.3
1781 Male, age 74, unknown 90.4
2289 Male, age 61, right hemisphere 76.1
2481 Female, age 94, left hemisphere 73.6
2846 Female, age 79, unknown 72.7
1854 Male, age 80, left hemisphere 71.2
2288 Male, age 75, left hemisphere 65.8
2290 Female, age 72, unknown 62.5
1857 Female, age 85, left hemisphere 58.6
Claustrum
nTPM: 66.2
2292 Female, age 85, both hemispheres 86.7
2198 Male, age 80, both hemispheres 73.2
2196 Female, age 79, unknown 64.7
2491 Male, age 75, both hemispheres 63.9
2284 Female, age 91, both hemispheres 63.1
2392 Female, age 94, both hemispheres 62.1
2645 Female, age 72, unknown 61.8
1956 Male, age 74, unknown 61.5
2568 Male, age 61, both hemispheres 58.9
Globus pallidus, externus
nTPM: 85.8
2395 Male, age 75, both hemispheres 95.7
1996 Male, age 80, right hemisphere 93.0
2772 Female, age 79, unknown 93.0
2646 Male, age 61, right hemisphere 83.0
2567 Female, age 72, unknown 64.5
Globus pallidus, internus
nTPM: 82.7
2037 Male, age 80, right hemisphere 96.9
1818 Male, age 74, unknown 95.8
2778 Female, age 91, both hemispheres 86.5
2111 Female, age 85, right hemisphere 83.9
2483 Female, age 94, right hemisphere 73.3
2287 Male, age 75, right hemisphere 72.7
2566 Female, age 72, unknown 69.4
Nucleus accumbens
nTPM: 63.6
2732 Male, age 80, right hemisphere 82.8
2286 Male, age 75, left hemisphere 66.4
2391 Female, age 94, left hemisphere 65.1
1783 Male, age 74, unknown 63.1
2698 Female, age 72, unknown 60.0
1856 Female, age 91, right hemisphere 59.6
1806 Female, age 85, left hemisphere 59.4
2824 Male, age 61, right hemisphere 52.1
Nucleus basalis of Meynert
nTPM: 79.2
2569 Male, age 61, both hemispheres 91.9
2484 Female, age 94, left hemisphere 81.3
2821 Male, age 75, both hemispheres 76.6
2393 Male, age 80, right hemisphere 67.2
Nucleus of the diagonal band
nTPM: 72.0
1812 Female, age 91, both hemispheres 107.9
1979 Male, age 74, unknown 74.0
2775 Male, age 80, right hemisphere 62.8
2195 Female, age 85, both hemispheres 59.2
2029 Male, age 61, right hemisphere 56.0
Olfactory tubercle
nTPM: 65.6
2487 Female, age 94, left hemisphere 70.7
1846 Male, age 80, right hemisphere 69.3
1998 Female, age 91, both hemispheres 61.3
2856 Male, age 75, right hemisphere 61.2
Putamen
nTPM: 66.7
2647 Male, age 75, left hemisphere 74.9
2482 Female, age 94, left hemisphere 72.7
2466 Female, age 79, unknown 68.8
2489 Female, age 72, unknown 66.1
1937 Female, age 91, right hemisphere 62.5
1838 Male, age 80, right hemisphere 61.9
1829 Male, age 74, unknown 59.8
Septal nuclei
nTPM: 75.4
2009 Female, age 91, both hemispheres 109.3
2199 Male, age 80, right hemisphere 91.9
2629 Female, age 94, right hemisphere 69.9
2031 Female, age 72, unknown 69.3
2394 Male, age 61, left hemisphere 67.8
2059 Female, age 85, both hemispheres 62.6
1960 Male, age 74, unknown 56.9

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 91.3
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 89.4
Samples: 246

Max nTPM: 504.7
Min nTPM: 11.4
Std nTPM: 70.9
Median nTPM: 69.3
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 504.7
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 454.3
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 422.6
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 344.1
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 311.5
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 278.7
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 268.5
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 256.9
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 251.4
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 245.3
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 242.0
Show allShow less
Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 63.3
Samples: 246

Max nTPM: 491.9
Min nTPM: 9.9
Std nTPM: 54.3
Median nTPM: 49.7
GTEX-X4XY-0011-R6B-SM-46MVB 60-69 years, male 491.9
GTEX-1E2YA-0011-R6b-SM-CE6R2 50-59 years, male 374.9
GTEX-PWO3-0011-R6A-SM-2I5F3 60-69 years, female 227.1
GTEX-X261-0011-R6B-SM-4E3J8 50-59 years, male 226.2
GTEX-1IL2U-0011-R6a-SM-ARZLG 60-69 years, male 223.0
GTEX-1EWIQ-0011-R6a-SM-ARU8G 70-79 years, female 204.7
GTEX-P44G-0011-R6A-SM-2XCD3 30-39 years, male 196.6
GTEX-16XZZ-0011-R6a-SM-7IGNE 60-69 years, male 190.7
GTEX-ZF28-0011-R6a-SM-4WKHI 60-69 years, male 190.5
GTEX-ZVT3-0011-R6a-SM-51MSU 60-69 years, female 176.9
GTEX-13OW5-0011-R6b-SM-5O9BW 60-69 years, male 172.5
Show allShow less
Brain - Putamen (basal ganglia)
Average nTPM: 91.3
Samples: 205

Max nTPM: 526.2
Min nTPM: 10.4
Std nTPM: 73.5
Median nTPM: 68.6
GTEX-1H4P4-0011-R7b-SM-ARU77 50-59 years, male 526.2
GTEX-13OVL-0011-R7a-SM-5P9GW 50-59 years, male 384.0
GTEX-X261-0011-R7A-SM-4E3JJ 50-59 years, male 352.0
GTEX-1EH9U-0011-R7a-SM-9QEGU 60-69 years, male 301.3
GTEX-1E2YA-0011-R7a-SM-CJI1Z 50-59 years, male 287.1
GTEX-1E1VI-0011-R7b-SM-9QEGR 50-59 years, male 275.2
GTEX-ZVT3-0011-R7a-SM-57WCO 60-69 years, female 270.9
GTEX-14BMV-0011-R7b-SM-5YY9J 50-59 years, male 268.5
GTEX-15DYW-0011-R7a-SM-7KULG 60-69 years, female 264.0
GTEX-1MA7X-0011-R7b-SM-EYYWS 60-69 years, male 253.2
GTEX-WHSE-0011-R7A-SM-3P5YZ 20-29 years, male 247.9
Show allShow less

BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 131.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 99.7
FF:10164-103B2 76 years, female 99.7
Globus pallidus
Scaled Tags Per Million: 131.9
FF:10161-103A8 76 years, female 153.3
FF:10175-103C4 60 years, female 110.5
Nucleus accumbens
Scaled Tags Per Million: 120.2
FF:10037-101F1 23-56 years, mixed 120.2
Putamen
Scaled Tags Per Million: 52.1
FF:10176-103C5 60 years, female 52.1

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 34.6
Pig sample Sample description nTPM
Caudate
nTPM: 26.6
Samples: 4

Max nTPM: 40.5
Min nTPM: 17.0
Sample A Female 24.7
Sample B Female 17.0
Sample C Male 40.5
Sample D Male 24.0
Putamen
nTPM: 27.7
Samples: 4

Max nTPM: 46.3
Min nTPM: 14.6
Sample A Female 23.3
Sample B Female 14.6
Sample C Male 46.3
Sample D Male 26.7
Septum
nTPM: 34.6
Samples: 4

Max nTPM: 56.7
Min nTPM: 13.7
Sample A Female 56.7
Sample B Female 13.7
Sample C Male 48.0
Sample D Male 20.1
Ventral pallidum
nTPM: 25.2
Samples: 4

Max nTPM: 43.6
Min nTPM: 18.1
Sample A Female 18.8
Sample B Female 18.1
Sample C Male 43.6
Sample D Male 20.4

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 23.5
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 23.5
Samples: 4

Max nTPM: 30.5
Min nTPM: 16.1
Sample A Male 30.5
Sample B Male 25.0
Sample C Female 16.1
Sample D Female 22.4
Septum
nTPM: 14.1
Samples: 4

Max nTPM: 17.6
Min nTPM: 10.0
Sample A Male 15.6
Sample B Male 17.6
Sample C Female 10.0
Sample D Female 13.1
Ventral forebrain
nTPM: 20.9
Samples: 4

Max nTPM: 24.8
Min nTPM: 12.3
Sample A Male 22.9
Sample B Male 23.5
Sample C Female 12.3
Sample D Female 24.8

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 2.6
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 2.6
71608353 Antisense, RP_050927_01_E09, Mouse strain C57BL/6J (56 days, male) 4.1
324212 Antisense, RP_040617_01_E07, Mouse strain C57BL/6J (56 days, male) 1.1
Pallidum
Expression energy: 1.7
71608353 Antisense, RP_050927_01_E09, Mouse strain C57BL/6J (56 days, male) 3.0
324212 Antisense, RP_040617_01_E07, Mouse strain C57BL/6J (56 days, male) 0.4

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.