MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:90.3 nTPM
HPA:90.3 nTPM
GTEx:99.0 nTPM
FANTOM5:317.3 Scaled Tags Per Million
Pig:101.8 nTPM
Mouse:14.5 nTPM
Allen mouse:2.1 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 90.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 81.3
2019 Male, age 18, unknown 127.9
2219 Male, age 76, both hemispheres 98.4
2666 Male, age 74, left hemisphere 89.5
1827 Male, age 72, unknown 76.2
2411 Female, age 72, unknown 75.5
1833 Male, age 53, unknown 74.9
2828 Female, age 72, unknown 74.1
1870 Female, age 42, unknown 66.6
1830 Male, age 51, unknown 65.9
2586 Male, age 75, left hemisphere 64.4
Dorsal raphe nucleus
nTPM: 80.2
2298 Female, age 72, unknown 108.9
2016 Female, age 72, unknown 86.9
1828 Male, age 53, unknown 78.0
2750 Male, age 76, both hemispheres 66.8
2047 Male, age 72, unknown 60.7
Inferior colliculus
nTPM: 70.0
2097 Female, age 72, unknown 83.0
1890 Male, age 53, unknown 79.9
2849 Male, age 72, unknown 59.2
1848 Female, age 42, unknown 57.8
Median raphe nucleus
nTPM: 73.1
2220 Male, age 76, midline 73.1
Pedunculopontine tegmental nucleus
nTPM: 81.5
2338 Male, age 61, both hemispheres 101.2
2334 Male, age 80, both hemispheres 77.2
1921 Female, age 85, both hemispheres 66.0
Periaquaductal grey, anterior
nTPM: 90.3
1795 Male, age 51, unknown 127.0
2502 Female, age 75, unknown 79.4
1947 Male, age 18, unknown 64.4
Periaquaductal grey, dorsal
nTPM: 84.1
1831 Male, age 72, unknown 114.6
2850 Male, age 76, both hemispheres 81.9
2464 Female, age 72, unknown 74.9
1840 Male, age 53, unknown 65.0
Periaquaductal grey, lateral
nTPM: 90.1
2272 Male, age 74, both hemispheres 110.7
2140 Male, age 76, both hemispheres 87.6
2053 Male, age 18, unknown 72.1
Pretectal area
nTPM: 90.0
1817 Female, age 42, unknown 129.1
2007 Male, age 72, unknown 121.9
1816 Male, age 51, unknown 110.0
2224 Female, age 72, unknown 99.5
2273 Male, age 74, both hemispheres 98.8
1815 Male, age 53, unknown 83.8
1944 Female, age 72, unknown 78.5
2667 Female, age 75, unknown 74.4
2316 Male, age 76, right hemisphere 70.8
2407 Male, age 75, both hemispheres 63.8
2825 Male, age 18, unknown 59.7
Red nucleus
nTPM: 78.7
2785 Male, age 18, unknown 137.9
1904 Male, age 53, unknown 88.0
2588 Male, age 74, left hemisphere 82.7
1821 Female, age 72, unknown 77.5
2503 Female, age 72, unknown 75.9
2725 Female, age 75, unknown 72.5
2227 Male, age 72, unknown 72.0
2769 Male, age 72, unknown 71.6
2584 Male, age 75, left hemisphere 68.8
1865 Male, age 51, unknown 66.8
1954 Female, age 42, unknown 66.8
2823 Male, age 76, right hemisphere 63.4
Substantia nigra
nTPM: 70.6
2665 Male, age 74, both hemispheres 84.2
2590 Female, age 75, unknown 83.7
1889 Female, age 72, unknown 80.1
2583 Male, age 75, right hemisphere 74.1
1851 Male, age 51, unknown 73.6
1941 Male, age 53, unknown 68.3
2699 Male, age 18, unknown 62.5
2409 Female, age 72, unknown 60.6
1916 Female, age 42, unknown 60.3
2241 Male, age 72, unknown 58.2
Superior colliculus
nTPM: 77.8
1995 Male, age 72, unknown 100.4
1913 Female, age 42, unknown 89.0
2587 Male, age 74, left hemisphere 88.9
2261 Male, age 18, unknown 85.6
2668 Female, age 75, unknown 76.8
2087 Female, age 72, unknown 76.4
1796 Male, age 53, unknown 73.1
2664 Male, age 75, both hemispheres 64.6
1895 Male, age 76, right hemisphere 61.9
1839 Male, age 51, unknown 61.0
Ventral tegmental area
nTPM: 72.6
1915 Female, age 42, unknown 77.8
2223 Female, age 72, unknown 76.5
2021 Male, age 53, unknown 71.7
1942 Male, age 51, unknown 70.7
2410 Female, age 72, unknown 70.1
2218 Male, age 76, both hemispheres 69.1

MIDBRAIN - GTEx RNA-seqi
Average nTPM 99.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 99.0
Samples: 139

Max nTPM: 309.9
Min nTPM: 17.4
Std nTPM: 51.6
Median nTPM: 87.7
GTEX-1IL2U-0011-R2a-SM-ARU6V 60-69 years, male 309.9
GTEX-145LS-0011-R2a-SM-5PNZI 60-69 years, female 229.4
GTEX-1LSNL-0011-R2a-SM-EZ6MK 50-59 years, male 221.3
GTEX-1C6VR-0011-R2a-SM-7RHGZ 60-69 years, male 205.7
GTEX-131XH-0011-R2b-SM-5DUVY 50-59 years, male 201.8
GTEX-11EMC-0011-R2b-SM-DO114 60-69 years, female 195.1
GTEX-1EU9M-0011-R2b-SM-9QEH7 60-69 years, male 193.9
GTEX-1E1VI-0011-R2a-SM-9QEGS 50-59 years, male 192.5
GTEX-14ASI-0011-R2b-SM-5YY9H 60-69 years, male 192.0
GTEX-T6MN-0011-R2A-SM-32QOW 50-59 years, male 187.5
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 184.0
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 317.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 317.3
FF:10158-103A5 76 years, female 317.3

MIDBRAIN - Pig RNA-seqi
Average nTPM 101.8
Pig sample Sample description nTPM
Midbrain
nTPM: 47.1
Samples: 4

Max nTPM: 82.0
Min nTPM: 19.3
Sample A Female 55.8
Sample B Female 19.3
Sample C Male 82.0
Sample D Male 31.3
Periaqueductal gray
nTPM: 20.4
Samples: 3

Max nTPM: 31.3
Min nTPM: 13.7
Sample B Female 13.7
Sample C Male 31.3
Sample D Male 16.2
Substantia nigra
nTPM: 57.9
Samples: 4

Max nTPM: 76.9
Min nTPM: 45.5
Sample A Female 60.5
Sample B Female 76.9
Sample C Male 48.7
Sample D Male 45.5
Superior colliculi
nTPM: 101.8
Samples: 4

Max nTPM: 167.8
Min nTPM: 54.1
Sample A Female 100.5
Sample B Female 167.8
Sample C Male 84.7
Sample D Male 54.1

MIDBRAIN - Mouse RNA-seqi
Average nTPM 14.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 14.5
Samples: 4

Max nTPM: 15.4
Min nTPM: 12.2
Sample A Male 15.4
Sample B Male 15.1
Sample C Female 12.2
Sample D Female 15.2

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 2.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 2.1
71608353 Antisense, RP_050927_01_E09, Mouse strain C57BL/6J (56 days, male) 3.1
324212 Antisense, RP_040617_01_E07, Mouse strain C57BL/6J (56 days, male) 1.1

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.