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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:515.2 nTPM
HPA:515.2 nTPM
GTEx:595.0 nTPM
FANTOM5:453.4 Scaled Tags Per Million

AMYGDALA - HPA Brain RNA-seq
Max nTPM 515.2
Sample id Sample description nTPM
Amygdala
nTPM: 515.2
2695 Female, age 67, right hemisphere 562.0
2514 Male, age 75, right hemisphere 517.0
2814 Male, age 76, right hemisphere 503.0
1987 Female, age 91, left hemisphere 500.3
2517 Female, age 94, left hemisphere 493.7
Basal amygdala
nTPM: 488.3
2827 Female, age 67, right hemisphere 516.5
2609 Male, age 75, right hemisphere 506.9
2685 Female, age 94, left hemisphere 486.7
2110 Male, age 80, left hemisphere 477.7
1955 Male, age 76, both hemispheres 473.8
2243 Female, age 91, right hemisphere 468.2
Central amygdala
nTPM: 500.6
2826 Female, age 94, left hemisphere 560.0
2515 Male, age 75, right hemisphere 512.1
1905 Male, age 76, both hemispheres 482.3
2701 Female, age 91, right hemisphere 475.2
2239 Male, age 80, left hemisphere 473.5
Corticomedial amygdala
nTPM: 483.5
2428 Male, age 75, right hemisphere 504.4
2535 Female, age 67, right hemisphere 489.1
2829 Male, age 80, left hemisphere 483.6
2240 Male, age 76, both hemispheres 479.6
2242 Female, age 91, right hemisphere 475.9
2429 Female, age 94, left hemisphere 468.8
Lateral amygdala
nTPM: 500.2
2830 Female, age 67, right hemisphere 540.5
2516 Male, age 75, right hemisphere 522.2
2534 Female, age 94, left hemisphere 510.3
2256 Male, age 80, left hemisphere 486.8
1883 Male, age 76, both hemispheres 474.4
2255 Female, age 91, right hemisphere 467.2
Stria terminalis, bed nucleus
nTPM: 473.1
1974 Female, age 91, both hemispheres 484.6
2201 Male, age 74, unknown 478.2
2486 Female, age 94, both hemispheres 456.6

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 595.0
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 595.0
Samples: 152

Max nTPM: 1520.5
Min nTPM: 304.0
Std nTPM: 184.0
Median nTPM: 562.1
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 1520.5
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 1474.6
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 1286.3
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 1175.2
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 1067.6
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 1042.7
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 1029.8
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 939.6
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 935.5
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 920.4
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 884.7
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 883.4
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 881.9
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 826.0
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 823.9
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 748.0
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 736.5
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 732.1
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 720.9
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 700.7
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 694.2
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 691.9
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 690.4
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 679.9
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 678.8
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 674.2
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 670.2
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 666.0
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 662.7
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 661.1
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 654.0
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 653.9
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 643.9
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 643.6
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 642.1
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 640.6
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 639.8
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 636.5
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 631.0
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 627.0
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 620.7
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 619.2
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 618.9
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 617.3
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 612.6
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 610.9
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 609.0
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 607.3
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 603.5
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 602.9
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 601.9
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 601.0
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 599.8
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 599.4
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 596.3
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 594.5
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 591.1
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 590.1
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 589.4
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 586.3
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 585.0
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 584.1
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 583.8
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 581.2
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 580.3
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 578.7
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 575.9
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 574.6
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 574.2
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 572.8
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 571.5
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 568.3
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 566.0
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 565.6
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 564.7
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 562.1
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 562.0
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 559.7
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 558.7
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 556.9
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 556.8
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 554.4
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 550.1
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 549.1
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 548.9
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 548.5
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 547.1
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 545.6
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 542.1
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 541.7
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 541.1
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 540.9
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 539.4
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 535.9
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 526.0
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 525.7
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 525.0
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 524.7
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 524.1
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 521.5
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 519.8
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 517.1
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 515.2
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 514.2
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 512.8
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 506.5
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 505.1
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 499.3
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 496.0
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 494.8
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 494.7
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 493.8
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 492.0
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 487.9
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 487.2
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 487.1
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 486.7
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 481.3
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 477.3
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 473.5
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 473.2
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 468.1
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 465.7
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 462.7
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 461.0
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 460.3
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 459.0
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 458.5
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 456.4
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 456.1
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 455.7
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 452.7
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 449.7
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 447.4
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 446.2
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 440.2
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 438.1
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 435.3
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 430.1
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 427.2
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 422.4
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 420.0
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 416.9
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 413.4
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 407.0
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 405.7
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 387.8
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 384.6
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 376.1
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 371.7
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 348.3
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 304.0
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 453.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 453.4
FF:10151-102I7 76 years, female 453.4

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