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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:549.0 nTPM
HPA:549.0 nTPM
GTEx:785.5 nTPM
FANTOM5:874.0 Scaled Tags Per Million

SPINAL CORD - HPA Brain RNA-seq
Max nTPM 549.0
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 513.2
1981 Female, age 72, midline 532.4
2565 Male, age 75, midline 529.9
2048 Male, age 55, midline 523.6
2816 Male, age 47, midline 492.1
2194 Female, age 79, both hemispheres 488.2
Cervical spinal cord, dorsal horn
nTPM: 520.5
2173 Female, age 72, unknown 558.4
2069 Male, age 47, both hemispheres 543.2
2296 Male, age 66, both hemispheres 531.6
1877 Male, age 55, unknown 521.0
2721 Male, age 90, both hemispheres 492.4
2297 Male, age 75, both hemispheres 476.4
Cervical spinal cord, ventral horn
nTPM: 549.0
2480 Male, age 75, both hemispheres 595.3
2098 Female, age 72, unknown 578.6
2809 Male, age 90, both hemispheres 573.0
2295 Male, age 66, both hemispheres 554.7
2068 Male, age 55, unknown 516.9
2820 Female, age 79, both hemispheres 475.7

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 785.5
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 785.5
Samples: 159

Max nTPM: 1439.8
Min nTPM: 363.7
Std nTPM: 206.8
Median nTPM: 774.7
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 1439.8
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 1309.6
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 1305.4
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 1294.2
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 1261.6
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 1237.5
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 1224.8
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 1224.7
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 1147.1
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 1143.2
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 1128.9
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 1124.9
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 1120.2
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 1113.2
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 1095.2
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 1060.8
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 1051.4
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 1048.1
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 1045.1
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 1037.0
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 1025.3
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 1018.8
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 1016.2
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 1013.7
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 1013.2
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 1012.9
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 999.9
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 980.4
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 968.4
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 966.8
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 949.3
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 947.3
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 940.9
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 930.4
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 927.0
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 926.3
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 920.4
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 914.0
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 912.5
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 911.0
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 896.2
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 885.1
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 880.9
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 880.7
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 875.1
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 869.3
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 861.0
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 860.2
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 854.8
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 845.4
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 838.5
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 837.6
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 837.0
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 835.8
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 832.7
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 832.1
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 830.2
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 826.4
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 825.4
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 823.4
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 823.2
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 823.1
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 816.8
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 816.3
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 814.5
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 812.9
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 811.9
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 811.2
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 810.4
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 807.7
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 805.3
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 801.5
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 800.6
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 791.7
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 791.5
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 784.7
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 784.2
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 781.8
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 777.0
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 774.7
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 774.0
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 763.7
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 760.0
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 755.3
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 753.3
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 747.3
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 736.7
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 736.6
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 731.3
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 724.0
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 722.9
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 720.8
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 719.7
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 717.8
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 709.4
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 707.0
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 703.2
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 692.3
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 690.4
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 687.7
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 685.7
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 685.6
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 684.7
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 684.3
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 682.7
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 679.5
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 678.8
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 678.8
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 676.9
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 673.2
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 667.1
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 661.6
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 657.1
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 656.4
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 656.0
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 654.1
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 650.6
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 645.6
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 640.3
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 639.1
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 635.6
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 634.9
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 633.9
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 611.6
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 609.6
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 606.7
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 606.0
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 601.7
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 599.6
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 599.2
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 597.9
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 581.7
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 581.4
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 578.0
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 574.6
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 570.5
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 570.2
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 568.9
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 565.7
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 558.8
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 556.8
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 555.4
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 553.6
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 552.2
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 543.0
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 525.2
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 524.3
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 519.5
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 517.8
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 511.5
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 504.0
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 498.7
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 493.1
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 490.9
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 462.6
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 414.0
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 380.9
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 376.4
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 363.7
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 874.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 874.0
FF:10181-103D1 60 years, female 1005.8
FF:10159-103A6 76 years, female 742.3

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