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BRAIN PONS Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Pons
PONS - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:541.3 nTPM
HPA:541.3 nTPM
FANTOM5:532.9 Scaled Tags Per Million

PONS - HPA Brain RNA-seq
Max nTPM 541.3
Sample id Sample description nTPM
Anterior cochlear nucleus, ventral
nTPM: 514.6
2188 Female, age 91, both hemispheres 532.5
2301 Female, age 85, both hemispheres 517.1
2090 Male, age 80, both hemispheres 514.9
1984 Male, age 76, both hemispheres 494.1
Dorsal cochlear nucleus
nTPM: 511.3
2802 Male, age 74, right hemisphere 544.4
2187 Female, age 91, both hemispheres 526.5
2378 Male, age 80, both hemispheres 511.1
2370 Male, age 61, both hemispheres 493.6
2058 Male, age 76, both hemispheres 480.7
Dorsal tegmental nucleus
nTPM: 509.4
2326 Male, age 74, both hemispheres 529.9
2083 Male, age 80, both hemispheres 516.0
2358 Male, age 61, both hemispheres 501.4
1936 Male, age 76, left hemisphere 490.2
Dorsolateral tegmental area
nTPM: 503.5
2654 Male, age 80, both hemispheres 526.0
2751 Female, age 85, both hemispheres 508.8
2360 Male, age 74, both hemispheres 500.3
2337 Male, age 61, both hemispheres 497.1
2141 Male, age 76, both hemispheres 485.4
Kolliker-Fuse nucleus
nTPM: 510.5
2315 Male, age 76, right hemisphere 519.1
2793 Female, age 91, left hemisphere 513.6
2163 Male, age 80, both hemispheres 499.0
Lateral lemniscal nuclei
nTPM: 489.5
2169 Male, age 76, both hemispheres 504.2
2746 Female, age 85, left hemisphere 501.9
2320 Female, age 91, left hemisphere 486.3
2453 Male, age 74, right hemisphere 483.6
2036 Male, age 80, both hemispheres 471.2
Lateral parabrachial nucleus
nTPM: 510.8
2792 Male, age 76, both hemispheres 531.3
2013 Male, age 80, both hemispheres 525.6
2139 Female, age 85, right hemisphere 513.3
2790 Male, age 61, both hemispheres 473.1
Lateral vestibular nucleus
nTPM: 499.8
2311 Male, age 80, both hemispheres 517.3
2184 Male, age 76, both hemispheres 482.3
Locus coeruleus
nTPM: 497.1
2720 Male, age 74, both hemispheres 521.4
2788 Male, age 74, unknown 502.9
2123 Female, age 91, both hemispheres 501.9
2014 Male, age 55, unknown 495.1
2162 Male, age 80, both hemispheres 491.3
2317 Female, age 72, unknown 490.9
1980 Male, age 76, both hemispheres 476.4
Medial olivary nucleus
nTPM: 541.3
1943 Male, age 61, both hemispheres 556.8
2138 Female, age 91, both hemispheres 544.9
2851 Male, age 80, both hemispheres 540.9
1962 Male, age 76, both hemispheres 522.7
Medial parabrachial nucleus
nTPM: 503.3
2170 Female, age 91, both hemispheres 531.5
2854 Male, age 80, both hemispheres 522.5
2463 Female, age 85, right hemisphere 497.9
2786 Male, age 76, both hemispheres 492.2
2156 Male, age 61, both hemispheres 472.3
Medial periolivary nuclei
nTPM: 496.5
2063 Male, age 76, both hemispheres 505.8
2791 Male, age 74, right hemisphere 499.7
2081 Male, age 80, both hemispheres 499.5
2458 Female, age 91, both hemispheres 497.7
2171 Female, age 85, both hemispheres 479.9
Motor facial nucleus
nTPM: 498.8
2795 Female, age 91, both hemispheres 512.5
2697 Female, age 85, both hemispheres 508.6
2365 Male, age 74, right hemisphere 500.8
2062 Male, age 76, both hemispheres 497.8
2126 Male, age 61, both hemispheres 496.9
2327 Male, age 80, both hemispheres 476.0
Motor trigeminal nucleus
nTPM: 489.4
2321 Female, age 91, both hemispheres 500.3
2560 Male, age 74, both hemispheres 493.8
2309 Male, age 76, both hemispheres 489.2
2335 Male, age 61, both hemispheres 486.2
2079 Male, age 80, both hemispheres 477.3
Nuclei of the trapezoid body
nTPM: 493.4
1983 Male, age 76, both hemispheres 518.8
2166 Male, age 80, both hemispheres 495.8
2159 Male, age 61, both hemispheres 493.9
2368 Female, age 91, both hemispheres 481.4
2735 Female, age 85, both hemispheres 477.0
Paramedian reticular nucleus
nTPM: 500.8
2052 Male, age 76, both hemispheres 516.4
2050 Female, age 85, both hemispheres 500.7
2313 Male, age 61, both hemispheres 496.4
2057 Male, age 80, both hemispheres 489.5
Pontine nuclei
nTPM: 501.5
2319 Female, age 91, both hemispheres 515.6
1863 Male, age 55, unknown 506.9
2787 Female, age 85, both hemispheres 504.2
2109 Female, age 72, unknown 501.6
1968 Male, age 76, left hemisphere 500.6
2454 Male, age 74, left hemisphere 497.0
2115 Male, age 80, left hemisphere 494.3
2727 Male, age 61, right hemisphere 491.9
Pontine raphe nucleus
nTPM: 495.4
2122 Female, age 85, midline 495.8
2853 Male, age 76, midline 494.9
Posteroventral cochlear nucleus
nTPM: 516.6
2341 Male, age 80, both hemispheres 546.2
2135 Female, age 91, both hemispheres 538.8
2371 Male, age 61, both hemispheres 510.8
2752 Female, age 85, both hemispheres 494.2
2070 Male, age 76, both hemispheres 493.3
Principal sensory trigeminal nucleus
nTPM: 488.1
2367 Female, age 91, left hemisphere 503.9
2158 Male, age 61, both hemispheres 490.7
2324 Male, age 76, both hemispheres 483.2
2008 Male, age 80, left hemisphere 474.7
Reticular pontine nucleus, caudal
nTPM: 498.5
2092 Male, age 76, both hemispheres 513.6
2559 Male, age 74, both hemispheres 506.0
2457 Female, age 91, both hemispheres 504.0
2332 Male, age 80, right hemisphere 470.4
Reticular pontine nucleus, oral
nTPM: 502.8
2366 Female, age 91, both hemispheres 510.3
1939 Male, age 80, both hemispheres 506.6
2167 Male, age 76, both hemispheres 502.5
2361 Male, age 74, both hemispheres 499.0
2012 Female, age 85, both hemispheres 495.5
Reticulotegmental nucleus
nTPM: 498.1
2452 Male, age 74, both hemispheres 508.8
2322 Female, age 91, both hemispheres 506.0
2333 Male, age 80, both hemispheres 491.7
2325 Male, age 76, both hemispheres 485.6
Spinal trigeminal nucleus, oral
nTPM: 488.3
2164 Male, age 80, both hemispheres 493.0
1978 Male, age 76, both hemispheres 489.0
2737 Female, age 85, both hemispheres 483.0
Subcoeruleus area
nTPM: 500.9
2369 Female, age 85, left hemisphere 516.8
2451 Male, age 74, both hemispheres 515.7
1958 Male, age 80, both hemispheres 498.0
2323 Female, age 91, left hemisphere 493.5
2089 Male, age 76, left hemisphere 480.2
Superior olive
nTPM: 494.4
2020 Male, age 76, both hemispheres 509.5
2561 Female, age 91, both hemispheres 496.2
2364 Male, age 74, right hemisphere 495.5
1875 Female, age 85, both hemispheres 489.8
2329 Male, age 80, right hemisphere 481.1
Superior vestibular nucleus
nTPM: 515.2
2383 Male, age 74, both hemispheres 544.2
2015 Male, age 80, both hemispheres 516.6
2061 Male, age 76, both hemispheres 484.8
Ventral periolivary nuclei
nTPM: 496.8
2023 Male, age 76, both hemispheres 515.0
2165 Male, age 80, both hemispheres 493.3
2794 Female, age 91, left hemisphere 492.6
2130 Female, age 85, both hemispheres 486.2
Ventrolateral tegmental area, A5 NE cell group
nTPM: 496.1
2840 Female, age 85, both hemispheres 516.6
2161 Male, age 80, both hemispheres 500.2
1959 Male, age 76, both hemispheres 499.3
2456 Female, age 91, both hemispheres 492.1
2359 Male, age 61, both hemispheres 486.1
2449 Male, age 74, both hemispheres 482.5

PONS - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 532.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Locus coeruleus
Scaled Tags Per Million: 495.0
FF:10182-103D2 60 years, female 551.2
FF:10165-103B3 76 years, female 438.7
Pons
Scaled Tags Per Million: 532.9
FF:10033-101E6 18-54 years, mixed 532.9

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The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.