MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:511.9 nTPM
HPA:511.9 nTPM
GTEx:739.1 nTPM
FANTOM5:542.2 Scaled Tags Per Million

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 511.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 501.1
2666 Male, age 74, left hemisphere 521.3
1870 Female, age 42, unknown 514.8
2828 Female, age 72, unknown 502.3
2411 Female, age 72, unknown 499.4
1833 Male, age 53, unknown 498.5
2586 Male, age 75, left hemisphere 498.1
1830 Male, age 51, unknown 497.5
1827 Male, age 72, unknown 495.4
2219 Male, age 76, both hemispheres 492.3
2019 Male, age 18, unknown 491.2
Dorsal raphe nucleus
nTPM: 501.4
2298 Female, age 72, unknown 511.6
2016 Female, age 72, unknown 511.4
1828 Male, age 53, unknown 498.1
2750 Male, age 76, both hemispheres 494.6
2047 Male, age 72, unknown 491.3
Inferior colliculus
nTPM: 504.5
2849 Male, age 72, unknown 514.5
1890 Male, age 53, unknown 504.6
1848 Female, age 42, unknown 501.6
2097 Female, age 72, unknown 497.1
Median raphe nucleus
nTPM: 495.4
2220 Male, age 76, midline 495.4
Pedunculopontine tegmental nucleus
nTPM: 500.3
2334 Male, age 80, both hemispheres 512.3
2338 Male, age 61, both hemispheres 505.7
1921 Female, age 85, both hemispheres 483.0
Periaquaductal grey, anterior
nTPM: 498.6
2502 Female, age 75, unknown 512.6
1947 Male, age 18, unknown 492.4
1795 Male, age 51, unknown 490.9
Periaquaductal grey, dorsal
nTPM: 502.1
1840 Male, age 53, unknown 509.7
2850 Male, age 76, both hemispheres 506.8
1831 Male, age 72, unknown 500.1
2464 Female, age 72, unknown 491.9
Periaquaductal grey, lateral
nTPM: 495.2
2053 Male, age 18, unknown 511.8
2140 Male, age 76, both hemispheres 487.9
2272 Male, age 74, both hemispheres 485.9
Pretectal area
nTPM: 495.5
1815 Male, age 53, unknown 506.1
2825 Male, age 18, unknown 506.1
2224 Female, age 72, unknown 504.7
1817 Female, age 42, unknown 502.1
2316 Male, age 76, right hemisphere 497.7
1816 Male, age 51, unknown 496.1
2407 Male, age 75, both hemispheres 491.6
2007 Male, age 72, unknown 491.0
2273 Male, age 74, both hemispheres 487.2
1944 Female, age 72, unknown 484.4
2667 Female, age 75, unknown 483.7
Red nucleus
nTPM: 511.9
2503 Female, age 72, unknown 535.9
1821 Female, age 72, unknown 528.0
2725 Female, age 75, unknown 524.3
1865 Male, age 51, unknown 515.7
2584 Male, age 75, left hemisphere 511.7
2769 Male, age 72, unknown 510.9
2588 Male, age 74, left hemisphere 509.0
1904 Male, age 53, unknown 506.6
2227 Male, age 72, unknown 505.9
1954 Female, age 42, unknown 501.8
2823 Male, age 76, right hemisphere 498.7
2785 Male, age 18, unknown 493.9
Substantia nigra
nTPM: 506.1
2699 Male, age 18, unknown 525.4
2665 Male, age 74, both hemispheres 522.8
1851 Male, age 51, unknown 519.0
2241 Male, age 72, unknown 513.0
2590 Female, age 75, unknown 507.8
1889 Female, age 72, unknown 500.1
1916 Female, age 42, unknown 497.0
2409 Female, age 72, unknown 495.7
2583 Male, age 75, right hemisphere 494.0
1941 Male, age 53, unknown 486.3
Superior colliculus
nTPM: 501.0
2587 Male, age 74, left hemisphere 532.4
1995 Male, age 72, unknown 511.4
1913 Female, age 42, unknown 510.2
2664 Male, age 75, both hemispheres 502.8
1839 Male, age 51, unknown 500.6
1796 Male, age 53, unknown 499.4
1895 Male, age 76, right hemisphere 493.9
2261 Male, age 18, unknown 488.6
2668 Female, age 75, unknown 487.0
2087 Female, age 72, unknown 483.7
Ventral tegmental area
nTPM: 503.9
2021 Male, age 53, unknown 515.7
1915 Female, age 42, unknown 513.9
2223 Female, age 72, unknown 511.6
2410 Female, age 72, unknown 497.5
1942 Male, age 51, unknown 496.5
2218 Male, age 76, both hemispheres 487.9

MIDBRAIN - GTEx RNA-seqi
Average nTPM 739.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 739.1
Samples: 139

Max nTPM: 1842.9
Min nTPM: 343.3
Std nTPM: 239.6
Median nTPM: 694.5
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 1842.9
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 1496.9
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 1399.3
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 1371.9
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 1359.5
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 1287.0
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 1165.0
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 1113.1
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 1097.0
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 1071.6
GTEX-11EMC-0011-R2b-SM-DO114 60-69 years, female 1060.6
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 542.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 542.2
FF:10158-103A5 76 years, female 542.2

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The Human Protein Atlas

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