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TISSUE PRIMARY DATA SMALL INTESTINE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM ENDOMETRIUM
EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MEDULLA OBLONGATA MIDBRAIN NASOPHARYNX ORAL MUCOSA
OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PONS PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE SMOOTH MUSCLE
SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THALAMUS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA WHITE MATTER
ANTIBODIES
AND
VALIDATION
Dictionary
Small intestine
Tissue proteome
Intestine
SMALL INTESTINE - Expression summary
Protein expression
Small intestinei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
h
m
l
n
Glandular cells: High
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:960.1 nTPM
HPA:731.2 nTPM
GTEx:960.1 nTPM
FANTOM5:1259.0 Scaled Tags Per Million

SMALL INTESTINE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Read more
Antibody HPA043717
Glandular cells High



SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Read more
Average nTPM 731.2
overview
Male, age 65
Small intestine sample 232
nTPM: 932.5
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40

overview
Male, age 39
Small intestine sample 233
nTPM: 706.2
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55

overview
Male, age 68
Small intestine sample 234
nTPM: 641.5
Cell types%
Glandular cells:
30

Smooth muscle cells:
15

Other cell types:
55

N/A
Male, age 85
Small intestine sample 235
nTPM: 644.5

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 960.1
GTEx sample id Sample description nTPM
Small Intestine - Terminal Ileum
Average nTPM: 960.1
Samples: 187

Max nTPM: 1868.8
Min nTPM: 455.4
Std nTPM: 285.8
Median nTPM: 941.5
GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 1868.8
GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 1786.0
GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 1732.9
GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 1713.3
GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 1660.7
GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 1623.4
GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 1613.0
GTEX-11TUW-1926-SM-5BC58 60-69 years, male 1548.0
GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 1516.5
GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 1499.7
GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 1497.4
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 1491.6
GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 1464.4
GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 1389.6
GTEX-183FY-1626-SM-793D8 20-29 years, male 1388.3
GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 1385.0
GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 1358.8
GTEX-1192X-2526-SM-59868 50-59 years, male 1356.8
GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 1355.0
GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 1326.3
GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 1297.0
GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 1294.7
GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 1266.3
GTEX-131XE-0926-SM-5HL7J 50-59 years, male 1263.8
GTEX-XPVG-1726-SM-4B65W 50-59 years, male 1260.8
GTEX-14PK6-1626-SM-6871I 70-79 years, female 1258.3
GTEX-16A39-1426-SM-6LLI6 30-39 years, female 1233.6
GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 1223.0
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 1217.3
GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 1216.7
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 1216.3
GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 1215.3
GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 1196.4
GTEX-117YX-0326-SM-5GICL 50-59 years, male 1191.7
GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 1188.8
GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 1183.5
GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 1179.6
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 1178.1
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 1171.4
GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 1169.3
GTEX-Y111-2226-SM-4SOJB 50-59 years, male 1167.8
GTEX-1CB4F-1826-SM-7MGXI 60-69 years, male 1137.8
GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 1133.7
GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 1132.6
GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 1131.3
GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 1126.9
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 1121.7
GTEX-17KNJ-1626-SM-718AL 50-59 years, male 1116.2
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 1112.8
GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 1112.0
GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 1111.5
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 1104.8
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 1103.6
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 1102.9
GTEX-13W3W-2026-SM-5K7UL 60-69 years, female 1100.1
GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 1096.2
GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 1094.3
GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 1091.4
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 1086.3
GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 1085.5
GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 1082.5
GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 1079.8
GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 1073.1
GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 1060.5
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 1057.7
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 1044.1
GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 1044.0
GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 1043.1
GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 1039.9
GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 1036.4
GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 1029.2
GTEX-WFON-1526-SM-4LVMP 40-49 years, male 1027.7
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 1023.9
GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 1020.6
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 1018.2
GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 1010.9
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 1008.0
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 993.4
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 991.8
GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 990.2
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 989.8
GTEX-1C475-1426-SM-793CH 40-49 years, female 989.5
GTEX-13O61-1326-SM-5KM31 60-69 years, male 983.3
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 982.7
GTEX-14PKU-1626-SM-6871C 40-49 years, female 981.2
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 977.5
GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 977.2
GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 970.9
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 967.1
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 957.1
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 952.8
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 950.1
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 942.4
GTEX-13111-1426-SM-5DUW3 50-59 years, male 941.5
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 939.1
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 937.1
GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 936.9
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 929.3
GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 926.3
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 920.6
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 909.1
GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 908.3
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 897.3
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 894.4
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 889.9
GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 884.3
GTEX-13113-1226-SM-5EGHT 60-69 years, female 883.4
GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 881.3
GTEX-13X6H-1826-SM-7EWCZ 50-59 years, female 875.6
GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 875.0
GTEX-1497J-1926-SM-5TDCC 60-69 years, male 867.6
GTEX-1C64O-2526-SM-79ONO 60-69 years, male 861.5
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 859.6
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 854.5
GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 852.8
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 848.2
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 840.3
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 832.6
GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 820.0
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 818.3
GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 811.9
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 811.9
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 803.4
GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 802.7
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 802.1
GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 798.3
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 794.4
GTEX-17HHE-1726-SM-79OKT 50-59 years, male 788.8
GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 787.6
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 786.6
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 780.3
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 779.5
GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 769.7
GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 766.4
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 765.4
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 762.0
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 760.9
GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 759.4
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 752.5
GTEX-14PJ3-1326-SM-664O7 50-59 years, male 749.2
GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 741.6
GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 736.6
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 722.1
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 712.6
GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 709.6
GTEX-144GM-1026-SM-79OKU 20-29 years, male 708.8
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 701.2
GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 701.1
GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 694.2
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 691.0
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 690.5
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 690.1
GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 686.8
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 680.4
GTEX-14PN3-2026-SM-68729 60-69 years, female 679.3
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 677.5
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 675.5
GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 674.5
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 670.9
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 665.5
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 663.5
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 662.4
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 657.9
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 655.1
GTEX-1AMFI-1926-SM-731F2 50-59 years, female 645.9
GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 640.3
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 635.5
GTEX-14PJN-0826-SM-686ZL 30-39 years, male 629.2
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 609.1
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 605.4
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 600.6
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 582.1
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 566.9
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 562.2
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 553.6
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 549.4
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 548.9
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 540.6
GTEX-1122O-1326-SM-5H11F 60-69 years, female 539.7
GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 537.7
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 533.2
GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 530.9
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 515.4
GTEX-YFCO-1326-SM-664NV 40-49 years, male 512.8
GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 508.8
GTEX-ZTSS-0926-SM-59865 40-49 years, male 503.1
GTEX-111YS-1426-SM-5GID8 60-69 years, male 455.4
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SMALL INTESTINE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 1259.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Small intestine
Scaled Tags Per Million: 1259.0
FF:10024-101D6 15,40,85 years, mixed 1259.0

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