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BRAIN MEDULLA OBLONGATA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Medulla oblongata
MEDULLA OBLONGATA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:5976.3 nTPM
HPA:5976.3 nTPM
FANTOM5:4788.1 Scaled Tags Per Million
Pig:6358.0 nTPM
Allen mouse:22.3 Expression energy

MEDULLA OBLONGATA - HPA Brain RNA-seq
Max nTPM 5976.3
Sample id Sample description nTPM
Area postrema
nTPM: 3173.9
2306 Male, age 80, both hemispheres 4751.1
2799 Male, age 61, both hemispheres 2412.2
2054 Male, age 76, both hemispheres 2358.4
Cuneate nuclei
nTPM: 4092.3
2381 Male, age 80, both hemispheres 4691.0
2376 Male, age 61, both hemispheres 4247.2
2131 Male, age 76, both hemispheres 3338.9
Dorsal medullary reticular nucleus
nTPM: 3679.5
2373 Male, age 61, both hemispheres 3887.9
2040 Female, age 85, both hemispheres 3729.5
2088 Male, age 76, both hemispheres 3421.2
Dorsal motor vagal complex
nTPM: 2794.5
2185 Male, age 76, both hemispheres 4203.6
2807 Female, age 85, both hemispheres 3154.2
2000 Male, age 74, unknown 2905.0
2797 Male, age 61, both hemispheres 2787.7
2133 Female, age 91, both hemispheres 2647.5
2643 Male, age 74, both hemispheres 2380.4
2813 Female, age 72, unknown 2168.2
2844 Male, age 55, unknown 2109.4
Gigantocellular reticular nuclei, medullary
nTPM: 3873.6
2314 Male, age 61, both hemispheres 6217.8
2387 Female, age 91, both hemispheres 4307.2
1876 Female, age 85, both hemispheres 4009.6
2310 Male, age 80, both hemispheres 3379.9
2022 Male, age 76, right hemisphere 3048.5
2462 Male, age 74, both hemispheres 2278.6
Gigantocellular reticular nuclei, pars
nTPM: 3258.8
2336 Male, age 61, both hemispheres 3899.5
2706 Male, age 80, both hemispheres 3475.1
2330 Male, age 80, both hemispheres 3277.0
2084 Female, age 85, both hemispheres 3003.7
2168 Male, age 76, both hemispheres 2638.8
Inferior olive
nTPM: 4453.9
2178 Male, age 61, both hemispheres 5587.4
2563 Male, age 74, both hemispheres 4369.3
2085 Female, age 85, both hemispheres 4321.5
2628 Female, age 91, both hemispheres 4161.5
2379 Male, age 80, both hemispheres 3829.7
Lateral medullary reticular nucleus
nTPM: 4736.9
2305 Male, age 74, both hemispheres 5905.3
2374 Male, age 61, both hemispheres 5115.6
2852 Male, age 80, both hemispheres 4835.9
2190 Female, age 85, both hemispheres 4742.4
2804 Female, age 91, both hemispheres 4160.9
2044 Male, age 76, both hemispheres 3661.0
Medial vestibular nucleus
nTPM: 3466.4
2801 Male, age 74, both hemispheres 4520.3
2803 Female, age 91, both hemispheres 4208.8
2093 Male, age 80, both hemispheres 3744.7
2624 Male, age 61, both hemispheres 3621.4
2743 Female, age 85, both hemispheres 2836.7
2134 Male, age 76, both hemispheres 1866.6
Motor hypoglossal nucleus
nTPM: 3337.2
2132 Female, age 85, both hemispheres 4458.3
2125 Female, age 91, both hemispheres 4148.2
2182 Male, age 80, both hemispheres 4115.1
2461 Male, age 61, both hemispheres 2175.9
2277 Male, age 76, both hemispheres 1788.4
Nucleus ambiguus
nTPM: 4322.4
2071 Male, age 76, both hemispheres 5664.3
2096 Female, age 85, both hemispheres 2980.5
Nucleus cuneatus
nTPM: 4111.2
2808 Female, age 85, both hemispheres 5763.4
2380 Male, age 80, both hemispheres 5127.6
2100 Male, age 76, both hemispheres 4501.1
2564 Male, age 74, both hemispheres 3535.9
2805 Female, age 91, both hemispheres 3021.1
2562 Male, age 61, both hemispheres 2718.3
Nucleus gracilis
nTPM: 4976.7
2382 Male, age 80, both hemispheres 6106.4
2627 Male, age 74, both hemispheres 4488.1
2299 Female, age 85, both hemispheres 4335.6
Nucleus raphe magnus
nTPM: 2859.9
2459 Female, age 91, both hemispheres 3642.1
2328 Male, age 80, both hemispheres 3589.6
2051 Male, age 76, both hemispheres 3335.2
2455 Male, age 74, both hemispheres 2842.3
2160 Male, age 61, both hemispheres 2011.7
2172 Female, age 85, both hemispheres 1738.7
Nucleus raphe obscurus
nTPM: 5976.3
2845 Female, age 85, midline 6796.0
2800 Male, age 61, midline 5662.5
2142 Male, age 76, midline 5470.4
Nucleus raphe pallidus
nTPM: 4942.0
2145 Male, age 76, midline 5912.2
1924 Male, age 61, midline 5210.5
2183 Male, age 80, midline 3703.2
Nucleus tractus solitarii
nTPM: 2085.1
2307 Male, age 80, both hemispheres 2167.1
2191 Female, age 85, both hemispheres 2119.0
2656 Male, age 76, both hemispheres 2084.8
2144 Female, age 91, right hemisphere 1969.3
Parvicellular reticular nuclei
nTPM: 3152.7
2095 Male, age 76, both hemispheres 3696.0
2119 Male, age 80, both hemispheres 3629.8
2558 Male, age 74, both hemispheres 2132.3
Parvicellular reticular nuclei, medullary
nTPM: 3126.8
2189 Female, age 91, both hemispheres 3334.5
2091 Female, age 85, both hemispheres 3063.3
2181 Male, age 80, left hemisphere 2982.7
Peritrigeminal nucleus
nTPM: 4270.2
2067 Female, age 85, both hemispheres 4361.0
2136 Male, age 76, both hemispheres 4303.8
2179 Male, age 61, both hemispheres 4145.9
Prepositus hypoglossal nucleus
nTPM: 3844.4
2855 Female, age 85, right hemisphere 5168.7
2086 Male, age 80, both hemispheres 2520.1
Spinal trigeminal nucleus, caudal
nTPM: 3807.6
2312 Male, age 61, both hemispheres 4830.0
2308 Male, age 80, both hemispheres 4227.2
2447 Male, age 76, both hemispheres 3613.6
2390 Female, age 91, both hemispheres 3285.1
2642 Male, age 74, both hemispheres 3082.0
Spinal trigeminal nucleus, interpolar
nTPM: 2978.8
2386 Female, age 85, both hemispheres 3459.4
2033 Male, age 80, both hemispheres 3240.1
2389 Female, age 91, both hemispheres 3118.8
2066 Male, age 76, right hemisphere 2763.9
2625 Male, age 61, both hemispheres 2311.9
Spinal vestibular nucleus
nTPM: 3611.7
2806 Female, age 85, both hemispheres 4395.9
2748 Male, age 76, both hemispheres 4226.3
2186 Female, age 91, both hemispheres 3561.5
2780 Male, age 80, both hemispheres 3258.3
2384 Male, age 74, both hemispheres 3232.6
2796 Male, age 61, both hemispheres 2995.6
Ventral medullary reticular nucleus
nTPM: 4380.1
2372 Male, age 61, both hemispheres 4865.0
2060 Male, age 76, both hemispheres 3895.2
Ventrolateral medulla, A1-C1 cell groups
nTPM: 4141.3
2180 Male, age 61, both hemispheres 4888.5
2118 Male, age 80, both hemispheres 4715.5
1986 Male, age 76, both hemispheres 3812.7
2741 Female, age 85, both hemispheres 3668.9
2302 Female, age 91, both hemispheres 3621.0

MEDULLA OBLONGATA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 4788.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Medulla oblongata
Scaled Tags Per Million: 4788.1
FF:10038-101F2 18-64 years, mixed 6170.7
FF:10155-103A2 76 years, female 4340.7
FF:10174-103C3 60 years, female 3853.0

MEDULLA OBLONGATA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 6358.0
Pig sample Sample description nTPM
Medulla oblongata
nTPM: 6358.0
Samples: 4

Max nTPM: 8496.9
Min nTPM: 3707.0
Sample A Female 7450.6
Sample B Female 3707.0
Sample C Male 5777.4
Sample D Male 8496.9

MEDULLA OBLONGATA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 22.3
Allen experiment id Experiment description Expression energy
Medulla oblongata
Expression energy: 22.3
75457515 Antisense, RP_060523_03_H05, Mouse strain C57BL/6J (56 days, male) 25.5
75496147 Antisense, RP_060523_03_G05, Mouse strain C57BL/6J (56 days, male) 24.4
75496529 Antisense, RP_060523_03_H05, Mouse strain C57BL/6J (56 days, male) 24.2
75496510 Antisense, RP_060523_03_G05, Mouse strain C57BL/6J (56 days, male) 23.9
75457514 Antisense, RP_060523_03_G05, Mouse strain C57BL/6J (56 days, male) 23.5
75457513 Antisense, RP_060523_03_F05, Mouse strain C57BL/6J (56 days, male) 23.4
75496148 Antisense, RP_060523_03_H05, Mouse strain C57BL/6J (56 days, male) 23.3
75457512 Antisense, RP_060523_03_E05, Mouse strain C57BL/6J (56 days, male) 23.0
75496500 Antisense, RP_060523_03_F05, Mouse strain C57BL/6J (56 days, male) 22.0
75496499 Antisense, RP_060523_03_E05, Mouse strain C57BL/6J (56 days, male) 22.0
75496145 Antisense, RP_060523_03_E05, Mouse strain C57BL/6J (56 days, male) 21.6
75496146 Antisense, RP_060523_03_F05, Mouse strain C57BL/6J (56 days, male) 21.5
79556704 Antisense, RP_071204_01_D07, Mouse strain C57BL/6J (56 days, male) 21.4
75492744 Antisense, RP_060523_03_H05, Mouse strain C57BL/6J (56 days, male) 20.6
75492714 Antisense, RP_060523_03_E05, Mouse strain C57BL/6J (56 days, male) 20.4
69117382 Antisense, RP_050330_01_A05, Mouse strain C57BL/6J (56 days, male) 20.4
75492715 Antisense, RP_060523_03_F05, Mouse strain C57BL/6J (56 days, male) 20.2
2490 Antisense, RP_Baylor_102969, Mouse strain C57BL/6J (56 days, male) 17.9
75492725 Antisense, RP_060523_03_G05, Mouse strain C57BL/6J (56 days, male) 17.7

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The Human Protein Atlas project is funded
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