MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:3571.3 nTPM
HPA:3571.3 nTPM
GTEx:4098.0 nTPM
FANTOM5:8806.1 Scaled Tags Per Million
Pig:5762.8 nTPM
Mouse:4634.0 nTPM
Allen mouse:21.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 3571.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 2912.8
2411 Female, age 72, unknown 3842.7
1830 Male, age 51, unknown 3588.9
1870 Female, age 42, unknown 3520.0
1833 Male, age 53, unknown 3436.5
2019 Male, age 18, unknown 3419.2
2828 Female, age 72, unknown 2871.5
2219 Male, age 76, both hemispheres 2443.6
1827 Male, age 72, unknown 2283.4
2666 Male, age 74, left hemisphere 2027.9
2586 Male, age 75, left hemisphere 1694.7
Dorsal raphe nucleus
nTPM: 2483.0
2750 Male, age 76, both hemispheres 4118.2
2016 Female, age 72, unknown 2552.1
1828 Male, age 53, unknown 2274.5
2298 Female, age 72, unknown 1752.5
2047 Male, age 72, unknown 1717.7
Inferior colliculus
nTPM: 2178.2
1848 Female, age 42, unknown 2305.2
1890 Male, age 53, unknown 2252.7
2849 Male, age 72, unknown 2130.4
2097 Female, age 72, unknown 2024.4
Median raphe nucleus
nTPM: 2291.8
2220 Male, age 76, midline 2291.8
Pedunculopontine tegmental nucleus
nTPM: 2772.6
2334 Male, age 80, both hemispheres 3206.6
1921 Female, age 85, both hemispheres 2734.8
2338 Male, age 61, both hemispheres 2376.3
Periaquaductal grey, anterior
nTPM: 2033.8
2502 Female, age 75, unknown 2380.5
1947 Male, age 18, unknown 2004.7
1795 Male, age 51, unknown 1716.1
Periaquaductal grey, dorsal
nTPM: 1725.9
2464 Female, age 72, unknown 2344.9
1831 Male, age 72, unknown 1855.1
2850 Male, age 76, both hemispheres 1363.7
1840 Male, age 53, unknown 1339.8
Periaquaductal grey, lateral
nTPM: 1926.8
2272 Male, age 74, both hemispheres 2292.3
2053 Male, age 18, unknown 2097.2
2140 Male, age 76, both hemispheres 1390.9
Pretectal area
nTPM: 2151.2
2316 Male, age 76, right hemisphere 2854.7
1815 Male, age 53, unknown 2669.6
2407 Male, age 75, both hemispheres 2514.5
1817 Female, age 42, unknown 2276.2
2273 Male, age 74, both hemispheres 2226.6
2825 Male, age 18, unknown 2187.1
2007 Male, age 72, unknown 2153.4
2224 Female, age 72, unknown 1916.7
1944 Female, age 72, unknown 1655.8
2667 Female, age 75, unknown 1644.7
1816 Male, age 51, unknown 1564.2
Red nucleus
nTPM: 3571.3
1865 Male, age 51, unknown 4419.8
1821 Female, age 72, unknown 4415.1
2823 Male, age 76, right hemisphere 4314.0
1904 Male, age 53, unknown 3998.5
2785 Male, age 18, unknown 3746.2
2769 Male, age 72, unknown 3681.0
2227 Male, age 72, unknown 3649.0
2503 Female, age 72, unknown 3521.7
1954 Female, age 42, unknown 3430.3
2725 Female, age 75, unknown 2731.1
2588 Male, age 74, left hemisphere 2488.3
2584 Male, age 75, left hemisphere 2460.2
Substantia nigra
nTPM: 2213.6
2590 Female, age 75, unknown 2647.0
1889 Female, age 72, unknown 2527.0
1851 Male, age 51, unknown 2511.4
2409 Female, age 72, unknown 2414.9
2583 Male, age 75, right hemisphere 2304.4
2699 Male, age 18, unknown 2083.9
2241 Male, age 72, unknown 2057.6
1941 Male, age 53, unknown 2049.8
1916 Female, age 42, unknown 1880.4
2665 Male, age 74, both hemispheres 1659.9
Superior colliculus
nTPM: 2602.2
1913 Female, age 42, unknown 3487.7
1995 Male, age 72, unknown 3389.7
1895 Male, age 76, right hemisphere 3227.3
2587 Male, age 74, left hemisphere 3079.0
2668 Female, age 75, unknown 2772.4
1839 Male, age 51, unknown 2694.2
1796 Male, age 53, unknown 2184.6
2087 Female, age 72, unknown 1852.8
2261 Male, age 18, unknown 1694.0
2664 Male, age 75, both hemispheres 1639.9
Ventral tegmental area
nTPM: 2659.8
2223 Female, age 72, unknown 3691.1
2410 Female, age 72, unknown 2939.4
2218 Male, age 76, both hemispheres 2460.8
2021 Male, age 53, unknown 2357.3
1942 Male, age 51, unknown 2318.4
1915 Female, age 42, unknown 2191.9

MIDBRAIN - GTEx RNA-seqi
Average nTPM 4098.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 4098.0
Samples: 139

Max nTPM: 13833.1
Min nTPM: 700.8
Std nTPM: 2164.3
Median nTPM: 3566.8
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 13833.1
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 10531.9
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 9808.2
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 9543.7
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 9093.6
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 8835.6
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 8657.9
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 8493.7
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 8386.6
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 8352.1
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 7925.3
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 8806.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 8806.1
FF:10158-103A5 76 years, female 8806.1

MIDBRAIN - Pig RNA-seqi
Average nTPM 5762.8
Pig sample Sample description nTPM
Midbrain
nTPM: 5762.8
Samples: 4

Max nTPM: 14914.8
Min nTPM: 1923.6
Sample A Female 14914.8
Sample B Female 4089.6
Sample C Male 1923.6
Sample D Male 2123.0
Periaqueductal gray
nTPM: 2594.8
Samples: 3

Max nTPM: 3228.2
Min nTPM: 1702.4
Sample B Female 3228.2
Sample C Male 1702.4
Sample D Male 2853.8
Substantia nigra
nTPM: 4357.4
Samples: 4

Max nTPM: 8306.7
Min nTPM: 2113.8
Sample A Female 4068.3
Sample B Female 2113.8
Sample C Male 2940.9
Sample D Male 8306.7
Superior colliculi
nTPM: 3307.8
Samples: 4

Max nTPM: 4394.7
Min nTPM: 1623.9
Sample A Female 3749.9
Sample B Female 1623.9
Sample C Male 3462.8
Sample D Male 4394.7

MIDBRAIN - Mouse RNA-seqi
Average nTPM 4634.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 4634.0
Samples: 4

Max nTPM: 5207.7
Min nTPM: 4070.5
Sample A Male 4107.0
Sample B Male 4070.5
Sample C Female 5150.8
Sample D Female 5207.7

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 21.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 21.1
75496147 Antisense, RP_060523_03_G05, Mouse strain C57BL/6J (56 days, male) 22.9
75457515 Antisense, RP_060523_03_H05, Mouse strain C57BL/6J (56 days, male) 22.8
75496510 Antisense, RP_060523_03_G05, Mouse strain C57BL/6J (56 days, male) 22.1
75457514 Antisense, RP_060523_03_G05, Mouse strain C57BL/6J (56 days, male) 22.1
75457513 Antisense, RP_060523_03_F05, Mouse strain C57BL/6J (56 days, male) 22.0
75457512 Antisense, RP_060523_03_E05, Mouse strain C57BL/6J (56 days, male) 22.0
69117382 Antisense, RP_050330_01_A05, Mouse strain C57BL/6J (56 days, male) 21.9
75496148 Antisense, RP_060523_03_H05, Mouse strain C57BL/6J (56 days, male) 21.8
75496529 Antisense, RP_060523_03_H05, Mouse strain C57BL/6J (56 days, male) 21.7

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.