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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:3919.9 nTPM
HPA:3919.9 nTPM
GTEx:10788.8 nTPM
FANTOM5:6895.5 Scaled Tags Per Million
Pig:8361.7 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max nTPM 3919.9
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 3256.6
1981 Female, age 72, midline 4202.6
2816 Male, age 47, midline 3511.2
2048 Male, age 55, midline 3301.4
2194 Female, age 79, both hemispheres 3010.3
2565 Male, age 75, midline 2257.7
Cervical spinal cord, dorsal horn
nTPM: 3919.9
2296 Male, age 66, both hemispheres 7042.3
2173 Female, age 72, unknown 5388.8
2069 Male, age 47, both hemispheres 3536.3
1877 Male, age 55, unknown 3251.5
2721 Male, age 90, both hemispheres 2184.9
2297 Male, age 75, both hemispheres 2115.7
Cervical spinal cord, ventral horn
nTPM: 3672.1
2098 Female, age 72, unknown 4549.1
2068 Male, age 55, unknown 4027.5
2480 Male, age 75, both hemispheres 3559.0
2820 Female, age 79, both hemispheres 3368.1
2809 Male, age 90, both hemispheres 3349.3
2295 Male, age 66, both hemispheres 3179.3

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 10788.8
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 10788.8
Samples: 159

Max nTPM: 20690.6
Min nTPM: 2040.8
Std nTPM: 3807.6
Median nTPM: 10966.8
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 20690.6
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 19389.6
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 18583.0
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 18334.9
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 17469.0
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 17320.7
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 16950.6
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 16938.9
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 16767.7
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 16701.7
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 16683.4
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 16578.2
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 16541.7
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 16226.5
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 16049.3
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 16013.9
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 15606.1
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 15479.8
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 15443.2
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 15209.8
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 15173.6
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 15127.5
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 15015.6
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 14933.3
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 14702.1
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 14701.3
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 14604.3
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 14552.4
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 14508.9
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 14231.6
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 14049.4
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 14045.5
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 13909.8
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 13892.0
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 13860.8
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 13849.3
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 13673.5
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 13628.9
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 13613.8
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 13599.9
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 13408.9
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 13344.6
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 13247.3
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 13156.8
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 13070.8
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 13024.4
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 12859.2
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 12733.4
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 12705.9
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 12463.7
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 12455.6
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 12371.2
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 12310.8
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 12239.1
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 12234.5
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 12135.8
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 12124.2
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 12083.8
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 11947.0
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 11943.5
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 11876.4
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 11813.7
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 11796.3
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 11743.6
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 11621.8
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 11597.8
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 11574.8
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 11524.3
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 11430.6
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 11369.1
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 11292.6
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 11245.4
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 11240.4
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 11190.5
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 11175.5
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 11109.0
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 11071.6
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 10998.9
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 10996.1
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 10966.8
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 10775.5
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 10700.5
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 10662.6
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 10657.4
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 10591.2
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 10583.8
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 10551.9
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 10519.6
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 10398.3
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 10335.0
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 10326.0
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 10274.2
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 10271.2
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 10214.5
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 10188.5
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 10089.3
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 10048.2
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 9925.5
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 9923.3
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 9855.0
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 9814.7
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 9685.6
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 9606.7
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 9582.9
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 9543.5
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 9433.1
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 9406.8
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 9385.4
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 9369.6
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 9360.3
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 9156.7
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 8957.5
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 8911.8
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 8843.4
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 8664.5
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 8663.1
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 8515.9
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 8209.4
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 8082.0
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 7993.5
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 7926.7
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 7868.4
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 7849.6
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 7751.3
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 7748.4
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 7667.3
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 7551.2
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 7546.2
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 7505.9
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 7473.0
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 7332.5
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 7254.6
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 6825.6
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 6796.2
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 6449.8
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 6382.4
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 6290.7
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 6104.3
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 6056.8
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 6015.3
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 5807.1
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 5754.7
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 5696.4
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 5208.5
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 5012.0
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 4998.2
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 4735.1
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 4734.1
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 4509.2
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 4259.6
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 4125.6
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 4012.4
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 3764.0
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 3732.5
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 3400.9
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 3307.9
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 2908.2
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 2786.2
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 2040.8
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 6895.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 6895.5
FF:10181-103D1 60 years, female 6903.2
FF:10159-103A6 76 years, female 6887.7

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 8361.7
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 6669.6
Samples: 4

Max nTPM: 7552.7
Min nTPM: 5279.1
Sample A Female 6664.2
Sample B Female 7552.7
Sample C Male 5279.1
Sample D Male 7182.4
Ventral spinal cord
nTPM: 8361.7
Samples: 4

Max nTPM: 11848.4
Min nTPM: 5737.2
Sample A Female 7809.8
Sample B Female 8051.5
Sample C Male 5737.2
Sample D Male 11848.4

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