MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:136.6 nTPM
HPA:136.6 nTPM
GTEx:128.1 nTPM
FANTOM5:196.6 Scaled Tags Per Million
Mouse:54.1 nTPM
Allen mouse:6.3 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 136.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 121.6
1830 Male, age 51, unknown 142.0
2586 Male, age 75, left hemisphere 134.8
2411 Female, age 72, unknown 131.9
1833 Male, age 53, unknown 130.5
2666 Male, age 74, left hemisphere 128.2
1870 Female, age 42, unknown 120.0
2019 Male, age 18, unknown 115.2
2828 Female, age 72, unknown 112.6
2219 Male, age 76, both hemispheres 100.3
1827 Male, age 72, unknown 100.0
Dorsal raphe nucleus
nTPM: 96.2
2750 Male, age 76, both hemispheres 121.2
2016 Female, age 72, unknown 108.8
1828 Male, age 53, unknown 94.9
2047 Male, age 72, unknown 80.5
2298 Female, age 72, unknown 75.8
Inferior colliculus
nTPM: 93.1
2849 Male, age 72, unknown 100.2
1848 Female, age 42, unknown 95.2
1890 Male, age 53, unknown 94.0
2097 Female, age 72, unknown 82.8
Median raphe nucleus
nTPM: 81.3
2220 Male, age 76, midline 81.3
Pedunculopontine tegmental nucleus
nTPM: 102.0
2334 Male, age 80, both hemispheres 112.6
2338 Male, age 61, both hemispheres 98.3
1921 Female, age 85, both hemispheres 95.2
Periaquaductal grey, anterior
nTPM: 94.2
2502 Female, age 75, unknown 104.6
1947 Male, age 18, unknown 94.7
1795 Male, age 51, unknown 83.4
Periaquaductal grey, dorsal
nTPM: 88.4
2464 Female, age 72, unknown 106.3
1831 Male, age 72, unknown 90.8
1840 Male, age 53, unknown 80.1
2850 Male, age 76, both hemispheres 76.4
Periaquaductal grey, lateral
nTPM: 85.9
2053 Male, age 18, unknown 96.5
2272 Male, age 74, both hemispheres 84.2
2140 Male, age 76, both hemispheres 77.1
Pretectal area
nTPM: 92.7
1815 Male, age 53, unknown 109.3
2316 Male, age 76, right hemisphere 108.9
2407 Male, age 75, both hemispheres 107.4
2825 Male, age 18, unknown 101.3
1817 Female, age 42, unknown 94.6
2007 Male, age 72, unknown 92.7
2667 Female, age 75, unknown 85.5
2224 Female, age 72, unknown 83.3
1944 Female, age 72, unknown 79.6
2273 Male, age 74, both hemispheres 79.4
1816 Male, age 51, unknown 77.4
Red nucleus
nTPM: 136.6
2588 Male, age 74, left hemisphere 167.3
1865 Male, age 51, unknown 155.1
2503 Female, age 72, unknown 148.8
1904 Male, age 53, unknown 144.8
2769 Male, age 72, unknown 137.5
2227 Male, age 72, unknown 137.3
1821 Female, age 72, unknown 132.5
2823 Male, age 76, right hemisphere 128.4
2785 Male, age 18, unknown 126.8
1954 Female, age 42, unknown 123.3
2584 Male, age 75, left hemisphere 122.7
2725 Female, age 75, unknown 114.2
Substantia nigra
nTPM: 104.4
2665 Male, age 74, both hemispheres 120.9
2583 Male, age 75, right hemisphere 114.9
2590 Female, age 75, unknown 113.5
1851 Male, age 51, unknown 109.2
2409 Female, age 72, unknown 108.5
2699 Male, age 18, unknown 105.5
1889 Female, age 72, unknown 98.2
2241 Male, age 72, unknown 97.6
1941 Male, age 53, unknown 93.2
1916 Female, age 42, unknown 82.9
Superior colliculus
nTPM: 111.0
1995 Male, age 72, unknown 139.7
1913 Female, age 42, unknown 131.1
2587 Male, age 74, left hemisphere 120.4
1839 Male, age 51, unknown 118.2
1895 Male, age 76, right hemisphere 112.0
2664 Male, age 75, both hemispheres 110.7
2668 Female, age 75, unknown 109.0
1796 Male, age 53, unknown 93.7
2261 Male, age 18, unknown 88.3
2087 Female, age 72, unknown 86.7
Ventral tegmental area
nTPM: 100.6
2410 Female, age 72, unknown 113.8
2223 Female, age 72, unknown 111.1
2021 Male, age 53, unknown 99.9
1942 Male, age 51, unknown 97.6
1915 Female, age 42, unknown 94.5
2218 Male, age 76, both hemispheres 86.7

MIDBRAIN - GTEx RNA-seqi
Average nTPM 128.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 128.1
Samples: 139

Max nTPM: 496.1
Min nTPM: 16.9
Std nTPM: 83.9
Median nTPM: 106.1
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 496.1
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 378.2
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 377.3
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 318.1
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 304.1
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 302.3
GTEX-11EMC-0011-R2b-SM-DO114 60-69 years, female 290.1
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 286.0
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 274.5
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 268.7
GTEX-17HG3-0011-R2a-SM-7MGVX 30-39 years, female 265.2
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 196.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 196.6
FF:10158-103A5 76 years, female 196.6

MIDBRAIN - Mouse RNA-seqi
Average nTPM 54.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 54.1
Samples: 4

Max nTPM: 57.7
Min nTPM: 52.5
Sample A Male 53.7
Sample B Male 57.7
Sample C Female 52.6
Sample D Female 52.5

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 6.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 6.3
71612166 Antisense, RP_050927_02_C01, Mouse strain C57BL/6J (56 days, male) 6.3

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