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BRAIN PONS Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Pons
PONS - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:143.0 nTPM
HPA:143.0 nTPM
FANTOM5:186.1 Scaled Tags Per Million
Allen mouse:6.3 Expression energy

PONS - HPA Brain RNA-seq
Max nTPM 143.0
Sample id Sample description nTPM
Anterior cochlear nucleus, ventral
nTPM: 121.1
2188 Female, age 91, both hemispheres 155.8
2090 Male, age 80, both hemispheres 120.3
2301 Female, age 85, both hemispheres 114.5
1984 Male, age 76, both hemispheres 93.9
Dorsal cochlear nucleus
nTPM: 119.7
2370 Male, age 61, both hemispheres 126.2
2802 Male, age 74, right hemisphere 124.6
2378 Male, age 80, both hemispheres 120.8
2187 Female, age 91, both hemispheres 119.3
2058 Male, age 76, both hemispheres 107.7
Dorsal tegmental nucleus
nTPM: 109.5
2083 Male, age 80, both hemispheres 123.4
2326 Male, age 74, both hemispheres 120.2
1936 Male, age 76, left hemisphere 109.3
2358 Male, age 61, both hemispheres 85.1
Dorsolateral tegmental area
nTPM: 105.1
2654 Male, age 80, both hemispheres 131.4
2751 Female, age 85, both hemispheres 115.8
2360 Male, age 74, both hemispheres 97.7
2337 Male, age 61, both hemispheres 94.9
2141 Male, age 76, both hemispheres 85.8
Kolliker-Fuse nucleus
nTPM: 115.5
2793 Female, age 91, left hemisphere 144.9
2163 Male, age 80, both hemispheres 111.0
2315 Male, age 76, right hemisphere 90.5
Lateral lemniscal nuclei
nTPM: 113.7
2320 Female, age 91, left hemisphere 133.9
2036 Male, age 80, both hemispheres 127.6
2169 Male, age 76, both hemispheres 110.8
2746 Female, age 85, left hemisphere 98.3
2453 Male, age 74, right hemisphere 97.8
Lateral parabrachial nucleus
nTPM: 115.2
2792 Male, age 76, both hemispheres 153.4
2013 Male, age 80, both hemispheres 113.7
2790 Male, age 61, both hemispheres 100.5
2139 Female, age 85, right hemisphere 93.2
Lateral vestibular nucleus
nTPM: 110.5
2311 Male, age 80, both hemispheres 111.3
2184 Male, age 76, both hemispheres 109.6
Locus coeruleus
nTPM: 86.4
2720 Male, age 74, both hemispheres 106.9
2162 Male, age 80, both hemispheres 94.6
2317 Female, age 72, unknown 84.7
2014 Male, age 55, unknown 82.3
2788 Male, age 74, unknown 81.8
2123 Female, age 91, both hemispheres 80.5
1980 Male, age 76, both hemispheres 74.1
Medial olivary nucleus
nTPM: 117.4
2138 Female, age 91, both hemispheres 123.9
1943 Male, age 61, both hemispheres 121.7
1962 Male, age 76, both hemispheres 118.6
2851 Male, age 80, both hemispheres 105.5
Medial parabrachial nucleus
nTPM: 110.0
2463 Female, age 85, right hemisphere 114.5
2170 Female, age 91, both hemispheres 112.6
2786 Male, age 76, both hemispheres 112.2
2156 Male, age 61, both hemispheres 107.1
2854 Male, age 80, both hemispheres 103.7
Medial periolivary nuclei
nTPM: 109.0
2458 Female, age 91, both hemispheres 131.2
2081 Male, age 80, both hemispheres 116.8
2063 Male, age 76, both hemispheres 112.6
2791 Male, age 74, right hemisphere 92.4
2171 Female, age 85, both hemispheres 91.9
Motor facial nucleus
nTPM: 112.1
2697 Female, age 85, both hemispheres 126.9
2795 Female, age 91, both hemispheres 119.1
2126 Male, age 61, both hemispheres 118.2
2327 Male, age 80, both hemispheres 113.3
2062 Male, age 76, both hemispheres 103.0
2365 Male, age 74, right hemisphere 92.2
Motor trigeminal nucleus
nTPM: 121.5
2321 Female, age 91, both hemispheres 131.9
2309 Male, age 76, both hemispheres 129.6
2079 Male, age 80, both hemispheres 123.0
2335 Male, age 61, both hemispheres 113.8
2560 Male, age 74, both hemispheres 109.2
Nuclei of the trapezoid body
nTPM: 113.2
2166 Male, age 80, both hemispheres 131.4
2368 Female, age 91, both hemispheres 124.5
2159 Male, age 61, both hemispheres 113.1
1983 Male, age 76, both hemispheres 105.3
2735 Female, age 85, both hemispheres 91.9
Paramedian reticular nucleus
nTPM: 116.5
2052 Male, age 76, both hemispheres 135.2
2313 Male, age 61, both hemispheres 116.0
2057 Male, age 80, both hemispheres 113.9
2050 Female, age 85, both hemispheres 100.8
Pontine nuclei
nTPM: 117.9
2319 Female, age 91, both hemispheres 149.7
1968 Male, age 76, left hemisphere 129.0
2115 Male, age 80, left hemisphere 123.2
2454 Male, age 74, left hemisphere 119.6
1863 Male, age 55, unknown 116.2
2109 Female, age 72, unknown 114.5
2727 Male, age 61, right hemisphere 95.7
2787 Female, age 85, both hemispheres 95.4
Pontine raphe nucleus
nTPM: 98.9
2122 Female, age 85, midline 104.8
2853 Male, age 76, midline 92.9
Posteroventral cochlear nucleus
nTPM: 143.0
2135 Female, age 91, both hemispheres 184.7
2341 Male, age 80, both hemispheres 163.9
2371 Male, age 61, both hemispheres 146.4
2070 Male, age 76, both hemispheres 112.7
2752 Female, age 85, both hemispheres 107.5
Principal sensory trigeminal nucleus
nTPM: 110.3
2367 Female, age 91, left hemisphere 129.8
2324 Male, age 76, both hemispheres 106.3
2008 Male, age 80, left hemisphere 105.3
2158 Male, age 61, both hemispheres 100.0
Reticular pontine nucleus, caudal
nTPM: 124.4
2457 Female, age 91, both hemispheres 138.0
2559 Male, age 74, both hemispheres 120.8
2092 Male, age 76, both hemispheres 120.5
2332 Male, age 80, right hemisphere 118.2
Reticular pontine nucleus, oral
nTPM: 119.7
2366 Female, age 91, both hemispheres 165.4
1939 Male, age 80, both hemispheres 115.5
2167 Male, age 76, both hemispheres 111.2
2012 Female, age 85, both hemispheres 108.5
2361 Male, age 74, both hemispheres 97.7
Reticulotegmental nucleus
nTPM: 116.8
2452 Male, age 74, both hemispheres 123.3
2322 Female, age 91, both hemispheres 122.5
2333 Male, age 80, both hemispheres 117.9
2325 Male, age 76, both hemispheres 103.2
Spinal trigeminal nucleus, oral
nTPM: 102.6
2164 Male, age 80, both hemispheres 111.6
1978 Male, age 76, both hemispheres 104.2
2737 Female, age 85, both hemispheres 92.0
Subcoeruleus area
nTPM: 116.6
2369 Female, age 85, left hemisphere 130.7
2451 Male, age 74, both hemispheres 127.9
2089 Male, age 76, left hemisphere 118.6
1958 Male, age 80, both hemispheres 108.2
2323 Female, age 91, left hemisphere 97.5
Superior olive
nTPM: 118.4
2020 Male, age 76, both hemispheres 149.6
2561 Female, age 91, both hemispheres 130.3
2329 Male, age 80, right hemisphere 117.3
1875 Female, age 85, both hemispheres 105.0
2364 Male, age 74, right hemisphere 89.9
Superior vestibular nucleus
nTPM: 99.8
2015 Male, age 80, both hemispheres 111.3
2383 Male, age 74, both hemispheres 94.3
2061 Male, age 76, both hemispheres 93.9
Ventral periolivary nuclei
nTPM: 117.2
2023 Male, age 76, both hemispheres 144.3
2794 Female, age 91, left hemisphere 126.2
2165 Male, age 80, both hemispheres 110.1
2130 Female, age 85, both hemispheres 88.4
Ventrolateral tegmental area, A5 NE cell group
nTPM: 106.6
2456 Female, age 91, both hemispheres 126.0
1959 Male, age 76, both hemispheres 114.9
2161 Male, age 80, both hemispheres 111.2
2359 Male, age 61, both hemispheres 100.1
2840 Female, age 85, both hemispheres 96.4
2449 Male, age 74, both hemispheres 90.7

PONS - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

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Max Scaled Tags Per Million 186.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Locus coeruleus
Scaled Tags Per Million: 173.4
FF:10182-103D2 60 years, female 232.8
FF:10165-103B3 76 years, female 114.1
Pons
Scaled Tags Per Million: 186.1
FF:10033-101E6 18-54 years, mixed 186.1

PONS - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

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Max Expression energy 6.3
Allen experiment id Experiment description Expression energy
Pons
Expression energy: 6.3
71612166 Antisense, RP_050927_02_C01, Mouse strain C57BL/6J (56 days, male) 6.3

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