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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:541.8 nTPM
HPA:541.8 nTPM
GTEx:214.0 nTPM
FANTOM5:139.4 Scaled Tags Per Million
Pig:14.6 nTPM
Mouse:411.0 nTPM
Allen mouse:0.0 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max nTPM 541.8
Sample id Sample description nTPM
Amygdala
nTPM: 541.8
2814 Male, age 76, right hemisphere 559.7
2514 Male, age 75, right hemisphere 542.6
2695 Female, age 67, right hemisphere 540.4
1987 Female, age 91, left hemisphere 534.3
2517 Female, age 94, left hemisphere 531.9
Basal amygdala
nTPM: 527.4
2609 Male, age 75, right hemisphere 535.1
1955 Male, age 76, both hemispheres 534.1
2243 Female, age 91, right hemisphere 533.8
2110 Male, age 80, left hemisphere 532.2
2685 Female, age 94, left hemisphere 520.8
2827 Female, age 67, right hemisphere 508.6
Central amygdala
nTPM: 534.1
1905 Male, age 76, both hemispheres 549.8
2826 Female, age 94, left hemisphere 536.1
2515 Male, age 75, right hemisphere 530.8
2701 Female, age 91, right hemisphere 528.3
2239 Male, age 80, left hemisphere 525.3
Corticomedial amygdala
nTPM: 529.7
2829 Male, age 80, left hemisphere 542.8
2428 Male, age 75, right hemisphere 537.9
2242 Female, age 91, right hemisphere 535.1
2429 Female, age 94, left hemisphere 533.4
2240 Male, age 76, both hemispheres 523.3
2535 Female, age 67, right hemisphere 505.7
Lateral amygdala
nTPM: 524.3
1883 Male, age 76, both hemispheres 543.8
2534 Female, age 94, left hemisphere 533.1
2516 Male, age 75, right hemisphere 531.8
2255 Female, age 91, right hemisphere 514.1
2256 Male, age 80, left hemisphere 511.9
2830 Female, age 67, right hemisphere 511.4
Stria terminalis, bed nucleus
nTPM: 533.1
1974 Female, age 91, both hemispheres 549.7
2486 Female, age 94, both hemispheres 528.8
2201 Male, age 74, unknown 520.8

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 214.0
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 214.0
Samples: 152

Max nTPM: 704.9
Min nTPM: 98.9
Std nTPM: 81.7
Median nTPM: 202.2
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 704.9
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 612.8
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 486.4
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 440.1
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 417.8
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 392.4
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 390.6
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 342.8
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 327.9
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 327.0
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 326.3
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 319.8
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 317.8
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 317.3
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 316.8
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 314.1
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 302.3
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 296.6
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 279.0
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 277.4
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 266.5
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 265.9
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 263.5
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 260.6
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 257.4
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 257.2
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 255.7
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 254.6
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 253.5
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 245.1
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 244.2
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 242.0
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 238.2
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 236.8
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 233.9
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 231.2
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 230.2
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 226.9
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 224.6
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 223.8
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 223.4
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 223.2
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 222.3
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 220.7
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 220.2
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 219.6
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 218.7
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 217.9
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 217.8
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 217.5
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 215.5
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 215.1
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 214.7
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 213.6
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 212.9
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 212.8
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 212.5
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 210.9
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 210.7
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 210.3
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 209.0
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 208.6
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 208.3
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 207.8
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 206.2
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 206.0
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 206.0
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 205.8
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 205.4
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 205.4
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 205.3
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 205.2
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 205.2
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 203.7
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 202.9
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 202.9
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 201.5
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 197.3
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 196.0
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 194.5
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 194.1
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 194.0
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 193.9
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 190.9
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 190.4
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 190.4
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 189.6
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 189.3
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 187.6
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 186.8
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 185.4
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 185.3
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 185.2
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 184.2
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 182.5
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 181.2
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 179.0
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 179.0
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 177.6
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 177.5
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 176.5
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 176.5
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 175.6
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 175.1
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 174.6
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 173.7
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 173.0
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 172.2
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 171.9
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 171.9
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 171.6
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 170.8
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 170.8
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 170.6
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 170.2
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 168.4
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 167.4
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 166.3
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 165.5
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 164.5
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 163.9
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 163.6
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 162.7
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 161.0
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 159.5
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 159.2
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 158.9
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 158.5
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 156.2
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 155.4
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 151.3
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 150.9
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 150.1
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 149.9
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 146.5
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 146.3
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 144.0
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 138.5
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 138.3
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 136.8
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 133.4
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 132.2
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 132.0
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 131.3
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 131.1
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 128.6
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 126.1
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 124.7
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 123.1
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 116.2
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 105.9
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 98.9
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 139.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 139.4
FF:10151-102I7 76 years, female 139.4

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 14.6
Pig sample Sample description nTPM
Amygdala
nTPM: 14.6
Samples: 4

Max nTPM: 19.2
Min nTPM: 11.4
Sample A Female 19.2
Sample B Female 14.2
Sample C Male 13.5
Sample D Male 11.4

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 411.0
Mouse sample Sample description nTPM
Amygdala
nTPM: 411.0
Samples: 4

Max nTPM: 488.8
Min nTPM: 374.0
Sample A Male 374.0
Sample B Male 384.7
Sample C Female 488.8
Sample D Female 396.4

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 0.0
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 0.0
71763492 Antisense, RP_050921_02_A10, Mouse strain C57BL/6J (56 days, male) 0.0

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