MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:541.6 nTPM
HPA:541.6 nTPM
GTEx:206.5 nTPM
FANTOM5:143.6 Scaled Tags Per Million
Pig:27.6 nTPM
Mouse:372.6 nTPM
Allen mouse:0.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 541.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 528.6
2411 Female, age 72, unknown 541.5
1827 Male, age 72, unknown 539.8
1870 Female, age 42, unknown 535.8
2019 Male, age 18, unknown 534.7
2828 Female, age 72, unknown 529.4
2219 Male, age 76, both hemispheres 528.5
1833 Male, age 53, unknown 523.9
2666 Male, age 74, left hemisphere 522.6
1830 Male, age 51, unknown 518.8
2586 Male, age 75, left hemisphere 511.0
Dorsal raphe nucleus
nTPM: 535.6
2298 Female, age 72, unknown 550.5
1828 Male, age 53, unknown 536.7
2750 Male, age 76, both hemispheres 535.6
2047 Male, age 72, unknown 530.4
2016 Female, age 72, unknown 524.8
Inferior colliculus
nTPM: 538.7
2097 Female, age 72, unknown 546.8
1890 Male, age 53, unknown 543.4
1848 Female, age 42, unknown 532.6
2849 Male, age 72, unknown 532.1
Median raphe nucleus
nTPM: 535.4
2220 Male, age 76, midline 535.4
Pedunculopontine tegmental nucleus
nTPM: 540.6
2334 Male, age 80, both hemispheres 544.0
2338 Male, age 61, both hemispheres 540.5
1921 Female, age 85, both hemispheres 537.2
Periaquaductal grey, anterior
nTPM: 530.8
1947 Male, age 18, unknown 535.4
1795 Male, age 51, unknown 529.4
2502 Female, age 75, unknown 527.6
Periaquaductal grey, dorsal
nTPM: 531.2
2850 Male, age 76, both hemispheres 536.3
1840 Male, age 53, unknown 534.9
2464 Female, age 72, unknown 527.2
1831 Male, age 72, unknown 526.5
Periaquaductal grey, lateral
nTPM: 526.1
2272 Male, age 74, both hemispheres 529.5
2140 Male, age 76, both hemispheres 525.9
2053 Male, age 18, unknown 522.8
Pretectal area
nTPM: 541.6
1816 Male, age 51, unknown 558.7
1817 Female, age 42, unknown 558.1
2007 Male, age 72, unknown 557.5
1944 Female, age 72, unknown 556.5
1815 Male, age 53, unknown 544.4
2667 Female, age 75, unknown 543.4
2273 Male, age 74, both hemispheres 536.2
2224 Female, age 72, unknown 532.3
2825 Male, age 18, unknown 526.5
2316 Male, age 76, right hemisphere 523.3
2407 Male, age 75, both hemispheres 520.9
Red nucleus
nTPM: 534.7
1821 Female, age 72, unknown 551.5
2823 Male, age 76, right hemisphere 541.9
2503 Female, age 72, unknown 541.7
2785 Male, age 18, unknown 538.8
2769 Male, age 72, unknown 537.5
2227 Male, age 72, unknown 536.6
1865 Male, age 51, unknown 536.5
1954 Female, age 42, unknown 535.7
2725 Female, age 75, unknown 532.0
1904 Male, age 53, unknown 526.5
2588 Male, age 74, left hemisphere 522.5
2584 Male, age 75, left hemisphere 515.3
Substantia nigra
nTPM: 541.2
1889 Female, age 72, unknown 559.4
1916 Female, age 42, unknown 553.7
1941 Male, age 53, unknown 547.4
1851 Male, age 51, unknown 547.0
2699 Male, age 18, unknown 540.4
2590 Female, age 75, unknown 539.5
2409 Female, age 72, unknown 538.1
2665 Male, age 74, both hemispheres 537.2
2241 Male, age 72, unknown 531.5
2583 Male, age 75, right hemisphere 517.4
Superior colliculus
nTPM: 532.3
1895 Male, age 76, right hemisphere 547.8
2087 Female, age 72, unknown 541.2
2587 Male, age 74, left hemisphere 536.3
1796 Male, age 53, unknown 535.8
2668 Female, age 75, unknown 535.0
2261 Male, age 18, unknown 532.7
1913 Female, age 42, unknown 528.0
1995 Male, age 72, unknown 524.9
1839 Male, age 51, unknown 523.5
2664 Male, age 75, both hemispheres 517.7
Ventral tegmental area
nTPM: 536.8
2410 Female, age 72, unknown 548.8
2218 Male, age 76, both hemispheres 543.3
1915 Female, age 42, unknown 542.1
1942 Male, age 51, unknown 534.3
2223 Female, age 72, unknown 527.1
2021 Male, age 53, unknown 525.4

MIDBRAIN - GTEx RNA-seqi
Average nTPM 206.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 206.5
Samples: 139

Max nTPM: 388.2
Min nTPM: 93.1
Std nTPM: 53.5
Median nTPM: 198.2
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 388.2
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 365.1
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 344.6
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 329.6
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 324.8
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 324.1
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 319.3
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 309.1
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 304.7
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 302.1
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 301.7
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 143.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 143.6
FF:10158-103A5 76 years, female 143.6

MIDBRAIN - Pig RNA-seqi
Average nTPM 27.6
Pig sample Sample description nTPM
Midbrain
nTPM: 22.3
Samples: 4

Max nTPM: 25.5
Min nTPM: 20.3
Sample A Female 22.6
Sample B Female 20.3
Sample C Male 25.5
Sample D Male 20.7
Periaqueductal gray
nTPM: 18.6
Samples: 3

Max nTPM: 21.1
Min nTPM: 17.0
Sample B Female 17.8
Sample C Male 21.1
Sample D Male 17.0
Substantia nigra
nTPM: 21.1
Samples: 4

Max nTPM: 30.0
Min nTPM: 15.3
Sample A Female 30.0
Sample B Female 17.2
Sample C Male 22.0
Sample D Male 15.3
Superior colliculi
nTPM: 27.6
Samples: 4

Max nTPM: 30.1
Min nTPM: 22.2
Sample A Female 29.7
Sample B Female 28.4
Sample C Male 30.1
Sample D Male 22.2

MIDBRAIN - Mouse RNA-seqi
Average nTPM 372.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 372.6
Samples: 4

Max nTPM: 392.5
Min nTPM: 348.6
Sample A Male 384.6
Sample B Male 364.6
Sample C Female 348.6
Sample D Female 392.5

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.1
71763492 Antisense, RP_050921_02_A10, Mouse strain C57BL/6J (56 days, male) 0.1

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The Human Protein Atlas

The Human Protein Atlas project is funded
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