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BRAIN RETINA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Eye
Retina
RETINA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:398.6 nTPM
GTEx:398.6 nTPM
FANTOM5:91.1 Scaled Tags Per Million
Pig:13.8 nTPM
Mouse:610.2 nTPM

RETINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 398.6
GTEx sample id Sample description nTPM
Retina
Average nTPM: 398.6
Samples: 105

Max nTPM: 583.6
Min nTPM: 264.8
Std nTPM: 58.0
Median nTPM:
375_1 74 years, female 583.6
237_1 82 years, male 543.9
379_1 60 years, male 534.9
386_1 76 years, male 521.4
265_1 87 years, male 511.2
396_1 62 years, male 505.2
246_1 77 years, male 489.7
384_1 83 years, male 482.9
313_1 79 years, female 479.3
229_1 69 years, female 475.4
243_1 75 years, male 473.1
447_1 81 years, male 472.5
452_1 88 years, female 471.2
322_1 76 years, male 466.8
35_1 74 years, female 461.1
217_1 76 years, male 458.4
389_1 86 years, female 457.1
321_1 62 years, female 455.5
120_1 70 years, female 454.9
162_1 79 years, female 453.9
354_1 81 years, female 451.7
4_1 88 years, female 448.1
347_1 72 years, male 445.6
6_1 73 years, female 445.5
377_1 82 years, female 445.5
254_1 77 years, female 440.8
315_1 62 years, female 437.7
142_1 61 years, female 431.3
153_1 70 years, female 430.3
42_1 85 years, male 429.3
394_1 75 years, female 428.5
177_1 74 years, male 423.4
172_1 72 years, female 421.3
490_1 67 years, female 420.6
99_1 64 years, male 413.9
218_1 71 years, female 413.8
414_1 84 years, female 413.7
264_1 73 years, female 407.9
17_1 71 years, male 407.5
307_1 66 years, female 404.5
115_1 83 years, male 403.8
352_1 62 years, male 403.0
468_1 89 years, male 402.6
173_1 67 years, male 400.5
319_1 81 years, male 400.3
189_1 76 years, male 400.2
117_1 61 years, male 398.1
81_1 67 years, male 394.7
499_1 55 years, female 394.2
145_1 84 years, male 393.9
286_1 68 years, female 393.1
351_1 91 years, male 392.7
324_1 76 years, male 392.2
425_1 59 years, female 389.2
119_1 70 years, female 387.9
415_1 77 years, female 387.9
266_1 85 years, male 387.0
501_1 88 years, male 387.0
376_1 75 years, female 386.2
109_1 81 years, female 381.6
163_1 78 years, male 381.5
491_1 89 years, female 380.0
126_1 63 years, male 377.7
506_1 65 years, male 377.2
404_1 82 years, female 376.8
466_1 57 years, female 376.0
288_1 66 years, female 373.9
335_1 73 years, female 372.1
480_1 63 years, male 372.1
355_1 70 years, female 370.8
526_1 61 years, male 370.7
9_1 66 years, female 368.1
311_1 78 years, male 367.5
308_1 70 years, female 366.3
2_1 77 years, female 365.3
518_1 75 years, female 364.9
348_1 84 years, male 361.9
349_1 83 years, male 360.4
503_1 68 years, male 360.1
405_1 91 years, male 357.5
353_1 82 years, female 356.2
413_1 59 years, female 355.5
350_1 84 years, female 353.8
356_1 87 years, female 353.4
43_1 64 years, female 351.7
295_1 61 years, female 351.4
32_1 67 years, male 347.5
406_1 79 years, male 347.3
137_1 83 years, male 345.3
316_1 62 years, male 344.6
495_1 57 years, female 340.9
18_1 88 years, male 340.8
320_1 89 years, female 337.2
317_1 60 years, male 335.9
314_1 67 years, male 335.4
41_1 94 years, female 331.6
139_1 64 years, female 327.0
251_1 78 years, male 324.6
89_1 63 years, male 323.5
291_1 76 years, male 312.7
517_1 88 years, male 309.3
318_1 68 years, male 300.6
149_1 88 years, male 286.1
292_1 71 years, male 283.3
293_1 68 years, female 264.8
Show allShow less

RETINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 91.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Retina
Scaled Tags Per Million: 91.1
FF:10030-101E3 24-65 years, mixed 91.1

RETINA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 13.8
Pig sample Sample description nTPM
Retina
nTPM: 13.8
Samples: 4

Max nTPM: 16.3
Min nTPM: 12.2
Sample A Female 12.2
Sample B Female 13.3
Sample C Male 16.3
Sample D Male 13.4

RETINA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 610.2
Mouse sample Sample description nTPM
Retina
nTPM: 610.3
Samples: 4

Max nTPM: 703.3
Min nTPM: 464.8
Sample A Male 665.6
Sample B Male 464.8
Sample C Female 703.3
Sample D Female 607.3

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The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.