BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Low
Neuronal cells: Medium
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:62.4 nTPM
HPA:62.4 nTPM
GTEx:68.5 nTPM
FANTOM5:48.8 Scaled Tags Per Million
Pig:55.3 nTPM
Mouse:4.3 nTPM
Allen mouse:4.4 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA045472
Glial cells Low
Neuronal cells Medium



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 62.4
Sample id Sample description nTPM
Caudate nucleus
nTPM: 62.4
2288 Male, age 75, left hemisphere 63.9
2289 Male, age 61, right hemisphere 62.9
1854 Male, age 80, left hemisphere 62.5
1781 Male, age 74, unknown 62.2
2481 Female, age 94, left hemisphere 62.2
2846 Female, age 79, unknown 62.0
1857 Female, age 85, left hemisphere 61.8
2290 Female, age 72, unknown 61.3
Claustrum
nTPM: 59.9
2568 Male, age 61, both hemispheres 61.9
2491 Male, age 75, both hemispheres 61.3
2284 Female, age 91, both hemispheres 60.4
2198 Male, age 80, both hemispheres 59.9
2645 Female, age 72, unknown 59.9
1956 Male, age 74, unknown 59.8
2196 Female, age 79, unknown 59.1
2292 Female, age 85, both hemispheres 59.0
2392 Female, age 94, both hemispheres 57.6
Globus pallidus, externus
nTPM: 62.3
1996 Male, age 80, right hemisphere 65.4
2772 Female, age 79, unknown 64.0
2646 Male, age 61, right hemisphere 63.2
2395 Male, age 75, both hemispheres 59.7
2567 Female, age 72, unknown 59.1
Globus pallidus, internus
nTPM: 61.2
2287 Male, age 75, right hemisphere 65.5
2483 Female, age 94, right hemisphere 63.2
2778 Female, age 91, both hemispheres 62.0
2037 Male, age 80, right hemisphere 61.3
1818 Male, age 74, unknown 60.3
2566 Female, age 72, unknown 58.6
2111 Female, age 85, right hemisphere 57.6
Nucleus accumbens
nTPM: 60.9
2286 Male, age 75, left hemisphere 64.7
1806 Female, age 85, left hemisphere 62.2
1783 Male, age 74, unknown 61.6
1856 Female, age 91, right hemisphere 61.5
2824 Male, age 61, right hemisphere 61.1
2698 Female, age 72, unknown 59.9
2732 Male, age 80, right hemisphere 59.0
2391 Female, age 94, left hemisphere 57.0
Nucleus basalis of Meynert
nTPM: 59.9
2569 Male, age 61, both hemispheres 61.3
2484 Female, age 94, left hemisphere 59.9
2821 Male, age 75, both hemispheres 59.4
2393 Male, age 80, right hemisphere 58.9
Nucleus of the diagonal band
nTPM: 60.7
1979 Male, age 74, unknown 63.3
2775 Male, age 80, right hemisphere 61.2
2029 Male, age 61, right hemisphere 60.5
1812 Female, age 91, both hemispheres 59.5
2195 Female, age 85, both hemispheres 58.9
Olfactory tubercle
nTPM: 59.5
1998 Female, age 91, both hemispheres 61.0
2856 Male, age 75, right hemisphere 60.0
1846 Male, age 80, right hemisphere 58.9
2487 Female, age 94, left hemisphere 58.3
Putamen
nTPM: 59.9
1937 Female, age 91, right hemisphere 61.7
2466 Female, age 79, unknown 61.2
2647 Male, age 75, left hemisphere 60.7
2482 Female, age 94, left hemisphere 59.9
1838 Male, age 80, right hemisphere 59.4
1829 Male, age 74, unknown 58.6
2489 Female, age 72, unknown 57.8
Septal nuclei
nTPM: 59.1
1960 Male, age 74, unknown 62.4
2059 Female, age 85, both hemispheres 59.2
2629 Female, age 94, right hemisphere 59.2
2031 Female, age 72, unknown 59.1
2199 Male, age 80, right hemisphere 58.8
2009 Female, age 91, both hemispheres 58.4
2394 Male, age 61, left hemisphere 56.3

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 68.5
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 64.5
Samples: 246

Max nTPM: 107.8
Min nTPM: 33.2
Std nTPM: 13.4
Median nTPM: 62.6
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 107.8
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 107.4
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 106.8
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 101.9
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 98.9
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 98.6
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 98.4
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 96.1
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 95.3
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 93.7
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 92.5
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 67.6
Samples: 246

Max nTPM: 116.0
Min nTPM: 32.1
Std nTPM: 15.9
Median nTPM: 66.6
GTEX-1IGQW-0011-R6a-SM-CM2TC 60-69 years, male 116.0
GTEX-1LC47-0011-R6b-SM-EZ6MI 60-69 years, male 114.7
GTEX-1J8Q2-0011-R6a-SM-CKZPG 60-69 years, male 112.0
GTEX-14753-0011-R6b-SM-5S2UD 60-69 years, male 110.8
GTEX-13IVO-0011-R6b-SM-5K7X9 70-79 years, male 107.2
GTEX-1HUB1-0011-R6b-SM-ARU6W 60-69 years, male 106.5
GTEX-1F88E-0011-R6a-SM-CKZNW 60-69 years, female 105.7
GTEX-147F4-0011-R6b-SM-5S2UP 50-59 years, male 104.6
GTEX-1RLM8-0011-R6a-SM-EYYXS 50-59 years, male 102.5
GTEX-17EVQ-0011-R6a-SM-7189U 70-79 years, male 101.2
GTEX-1LVAO-0011-R6b-SM-EZ6MX 60-69 years, male 99.5
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Brain - Putamen (basal ganglia)
Average nTPM: 68.5
Samples: 205

Max nTPM: 108.2
Min nTPM: 38.7
Std nTPM: 13.1
Median nTPM: 67.6
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 108.2
GTEX-11DYG-0011-R7b-SM-EXUS6 60-69 years, male 105.5
GTEX-1I1GS-0011-R7a-SM-CM2T6 60-69 years, male 102.5
GTEX-17F97-0011-R7b-SM-7MGVY 50-59 years, male 99.2
GTEX-16Z82-0011-R7a-SM-7MKGJ 60-69 years, male 99.0
GTEX-1J8Q2-0011-R7a-SM-CKZPF 60-69 years, male 98.3
GTEX-11PRG-0011-R7a-SM-DNZZT 50-59 years, male 97.3
GTEX-1GF9W-0011-R7b-SM-9QEIF 60-69 years, male 96.7
GTEX-17EVP-0011-R7a-SM-7LTAN 40-49 years, male 94.9
GTEX-11DZ1-0011-R7a-SM-DNZZH 50-59 years, male 94.7
GTEX-17HII-0011-R7a-SM-79OMS 50-59 years, male 94.1
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 48.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 48.8
FF:10164-103B2 76 years, female 48.8
Globus pallidus
Scaled Tags Per Million: 43.7
FF:10161-103A8 76 years, female 44.8
FF:10175-103C4 60 years, female 42.6
Nucleus accumbens
Scaled Tags Per Million: 32.8
FF:10037-101F1 23-56 years, mixed 32.8
Putamen
Scaled Tags Per Million: 48.1
FF:10176-103C5 60 years, female 48.1

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 55.3
Pig sample Sample description nTPM
Caudate
nTPM: 52.3
Samples: 4

Max nTPM: 60.5
Min nTPM: 45.9
Sample A Female 46.3
Sample B Female 56.4
Sample C Male 60.5
Sample D Male 45.9
Putamen
nTPM: 55.3
Samples: 4

Max nTPM: 67.3
Min nTPM: 49.0
Sample A Female 50.2
Sample B Female 49.0
Sample C Male 67.3
Sample D Male 54.8
Septum
nTPM: 53.0
Samples: 4

Max nTPM: 63.0
Min nTPM: 43.2
Sample A Female 63.0
Sample B Female 53.7
Sample C Male 52.0
Sample D Male 43.2
Ventral pallidum
nTPM: 49.0
Samples: 4

Max nTPM: 57.9
Min nTPM: 42.5
Sample A Female 46.6
Sample B Female 57.9
Sample C Male 49.1
Sample D Male 42.5

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 4.3
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 3.4
Samples: 4

Max nTPM: 4.0
Min nTPM: 2.7
Sample A Male 4.0
Sample B Male 3.9
Sample C Female 3.1
Sample D Female 2.7
Septum
nTPM: 4.2
Samples: 4

Max nTPM: 4.5
Min nTPM: 3.7
Sample A Male 4.4
Sample B Male 4.5
Sample C Female 4.3
Sample D Female 3.7
Ventral forebrain
nTPM: 4.3
Samples: 4

Max nTPM: 5.2
Min nTPM: 3.0
Sample A Male 5.2
Sample B Male 3.0
Sample C Female 4.7
Sample D Female 4.1

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 4.4
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 4.1
69113841 Antisense, RP_050316_02_H06, Mouse strain C57BL/6J (56 days, male) 4.1
Pallidum
Expression energy: 4.4
69113841 Antisense, RP_050316_02_H06, Mouse strain C57BL/6J (56 days, male) 4.4

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The Human Protein Atlas

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