MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:62.0 nTPM
HPA:62.0 nTPM
GTEx:59.5 nTPM
FANTOM5:47.1 Scaled Tags Per Million
Pig:51.2 nTPM
Mouse:3.3 nTPM
Allen mouse:5.3 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 62.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 59.9
2586 Male, age 75, left hemisphere 65.1
1827 Male, age 72, unknown 60.9
2411 Female, age 72, unknown 60.7
2019 Male, age 18, unknown 60.3
1870 Female, age 42, unknown 60.1
2828 Female, age 72, unknown 59.7
1833 Male, age 53, unknown 58.6
2219 Male, age 76, both hemispheres 58.1
1830 Male, age 51, unknown 57.8
2666 Male, age 74, left hemisphere 57.8
Dorsal raphe nucleus
nTPM: 59.9
2298 Female, age 72, unknown 62.6
2047 Male, age 72, unknown 60.5
1828 Male, age 53, unknown 59.6
2750 Male, age 76, both hemispheres 59.6
2016 Female, age 72, unknown 57.4
Inferior colliculus
nTPM: 60.6
2849 Male, age 72, unknown 62.2
2097 Female, age 72, unknown 61.4
1848 Female, age 42, unknown 59.9
1890 Male, age 53, unknown 58.9
Median raphe nucleus
nTPM: 61.2
2220 Male, age 76, midline 61.2
Pedunculopontine tegmental nucleus
nTPM: 59.1
1921 Female, age 85, both hemispheres 61.4
2334 Male, age 80, both hemispheres 61.4
2338 Male, age 61, both hemispheres 54.5
Periaquaductal grey, anterior
nTPM: 62.0
1795 Male, age 51, unknown 62.7
1947 Male, age 18, unknown 61.7
2502 Female, age 75, unknown 61.6
Periaquaductal grey, dorsal
nTPM: 59.5
1840 Male, age 53, unknown 61.6
2850 Male, age 76, both hemispheres 59.8
2464 Female, age 72, unknown 58.8
1831 Male, age 72, unknown 57.8
Periaquaductal grey, lateral
nTPM: 58.7
2272 Male, age 74, both hemispheres 60.9
2140 Male, age 76, both hemispheres 59.7
2053 Male, age 18, unknown 55.6
Pretectal area
nTPM: 60.2
2007 Male, age 72, unknown 62.7
1817 Female, age 42, unknown 62.2
1816 Male, age 51, unknown 61.3
1944 Female, age 72, unknown 60.5
2224 Female, age 72, unknown 60.5
2825 Male, age 18, unknown 60.1
2273 Male, age 74, both hemispheres 59.8
2667 Female, age 75, unknown 59.3
1815 Male, age 53, unknown 59.1
2407 Male, age 75, both hemispheres 59.0
2316 Male, age 76, right hemisphere 57.6
Red nucleus
nTPM: 59.7
2725 Female, age 75, unknown 62.5
2503 Female, age 72, unknown 61.9
2785 Male, age 18, unknown 61.1
2227 Male, age 72, unknown 60.5
2588 Male, age 74, left hemisphere 60.0
2584 Male, age 75, left hemisphere 59.8
2769 Male, age 72, unknown 59.8
1904 Male, age 53, unknown 59.0
1821 Female, age 72, unknown 58.5
1865 Male, age 51, unknown 58.2
1954 Female, age 42, unknown 58.2
2823 Male, age 76, right hemisphere 57.0
Substantia nigra
nTPM: 57.9
1889 Female, age 72, unknown 61.7
1941 Male, age 53, unknown 60.6
1916 Female, age 42, unknown 59.7
1851 Male, age 51, unknown 59.2
2583 Male, age 75, right hemisphere 58.5
2699 Male, age 18, unknown 57.9
2590 Female, age 75, unknown 56.5
2665 Male, age 74, both hemispheres 56.1
2241 Male, age 72, unknown 55.2
2409 Female, age 72, unknown 53.1
Superior colliculus
nTPM: 59.1
1796 Male, age 53, unknown 60.9
2261 Male, age 18, unknown 60.8
1895 Male, age 76, right hemisphere 60.5
2087 Female, age 72, unknown 60.4
1839 Male, age 51, unknown 59.4
2668 Female, age 75, unknown 58.9
1913 Female, age 42, unknown 58.6
2664 Male, age 75, both hemispheres 57.5
1995 Male, age 72, unknown 57.3
2587 Male, age 74, left hemisphere 56.9
Ventral tegmental area
nTPM: 58.6
1915 Female, age 42, unknown 60.5
2218 Male, age 76, both hemispheres 60.1
2410 Female, age 72, unknown 58.8
1942 Male, age 51, unknown 58.5
2021 Male, age 53, unknown 56.9
2223 Female, age 72, unknown 56.9

MIDBRAIN - GTEx RNA-seqi
Average nTPM 59.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 59.5
Samples: 139

Max nTPM: 97.2
Min nTPM: 30.0
Std nTPM: 12.1
Median nTPM: 58.2
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 97.2
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 92.2
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 89.2
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 88.6
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 82.5
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 80.1
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 78.8
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 78.8
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 77.7
GTEX-1GMR8-0011-R2a-SM-CE6RD 50-59 years, female 76.8
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 75.7
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 47.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 47.1
FF:10158-103A5 76 years, female 47.1

MIDBRAIN - Pig RNA-seqi
Average nTPM 51.2
Pig sample Sample description nTPM
Midbrain
nTPM: 48.8
Samples: 4

Max nTPM: 56.7
Min nTPM: 41.5
Sample A Female 56.7
Sample B Female 54.6
Sample C Male 41.5
Sample D Male 42.5
Periaqueductal gray
nTPM: 50.7
Samples: 3

Max nTPM: 58.3
Min nTPM: 41.2
Sample B Female 52.6
Sample C Male 58.3
Sample D Male 41.2
Substantia nigra
nTPM: 51.3
Samples: 4

Max nTPM: 67.9
Min nTPM: 38.7
Sample A Female 67.9
Sample B Female 46.4
Sample C Male 52.0
Sample D Male 38.7
Superior colliculi
nTPM: 46.6
Samples: 4

Max nTPM: 63.2
Min nTPM: 39.2
Sample A Female 63.2
Sample B Female 39.2
Sample C Male 41.6
Sample D Male 42.5

MIDBRAIN - Mouse RNA-seqi
Average nTPM 3.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 3.3
Samples: 4

Max nTPM: 3.9
Min nTPM: 2.9
Sample A Male 3.9
Sample B Male 2.9
Sample C Female 3.2
Sample D Female 3.1

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 5.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 5.3
69113841 Antisense, RP_050316_02_H06, Mouse strain C57BL/6J (56 days, male) 5.3

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.