MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:122.9 nTPM
HPA:122.9 nTPM
GTEx:138.2 nTPM
FANTOM5:908.0 Scaled Tags Per Million
Mouse:10.1 nTPM
Allen mouse:8.3 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 122.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 100.3
2411 Female, age 72, unknown 135.9
1870 Female, age 42, unknown 129.4
1830 Male, age 51, unknown 122.2
1833 Male, age 53, unknown 115.4
2019 Male, age 18, unknown 113.3
2828 Female, age 72, unknown 106.3
2219 Male, age 76, both hemispheres 87.0
1827 Male, age 72, unknown 79.4
2666 Male, age 74, left hemisphere 63.2
2586 Male, age 75, left hemisphere 51.6
Dorsal raphe nucleus
nTPM: 93.6
2750 Male, age 76, both hemispheres 155.6
2016 Female, age 72, unknown 92.0
2298 Female, age 72, unknown 83.3
1828 Male, age 53, unknown 76.8
2047 Male, age 72, unknown 60.4
Inferior colliculus
nTPM: 76.6
1848 Female, age 42, unknown 79.8
2849 Male, age 72, unknown 76.6
1890 Male, age 53, unknown 75.8
2097 Female, age 72, unknown 74.1
Median raphe nucleus
nTPM: 76.0
2220 Male, age 76, midline 76.0
Pedunculopontine tegmental nucleus
nTPM: 100.1
2334 Male, age 80, both hemispheres 105.5
2338 Male, age 61, both hemispheres 100.9
1921 Female, age 85, both hemispheres 93.8
Periaquaductal grey, anterior
nTPM: 73.8
2502 Female, age 75, unknown 82.7
1947 Male, age 18, unknown 72.0
1795 Male, age 51, unknown 66.7
Periaquaductal grey, dorsal
nTPM: 68.7
2464 Female, age 72, unknown 83.9
1831 Male, age 72, unknown 71.1
2850 Male, age 76, both hemispheres 63.5
1840 Male, age 53, unknown 56.3
Periaquaductal grey, lateral
nTPM: 81.9
2272 Male, age 74, both hemispheres 105.1
2053 Male, age 18, unknown 76.5
2140 Male, age 76, both hemispheres 64.2
Pretectal area
nTPM: 83.5
2273 Male, age 74, both hemispheres 107.0
2316 Male, age 76, right hemisphere 106.0
2667 Female, age 75, unknown 99.1
1815 Male, age 53, unknown 92.0
2407 Male, age 75, both hemispheres 86.5
2224 Female, age 72, unknown 80.5
1817 Female, age 42, unknown 79.3
2825 Male, age 18, unknown 77.6
2007 Male, age 72, unknown 73.4
1944 Female, age 72, unknown 61.5
1816 Male, age 51, unknown 55.5
Red nucleus
nTPM: 122.9
1904 Male, age 53, unknown 146.7
1865 Male, age 51, unknown 146.2
2227 Male, age 72, unknown 141.5
2769 Male, age 72, unknown 140.0
2823 Male, age 76, right hemisphere 134.8
2785 Male, age 18, unknown 133.5
1821 Female, age 72, unknown 132.4
2503 Female, age 72, unknown 121.9
1954 Female, age 42, unknown 119.0
2725 Female, age 75, unknown 98.8
2588 Male, age 74, left hemisphere 82.5
2584 Male, age 75, left hemisphere 77.6
Substantia nigra
nTPM: 74.3
1851 Male, age 51, unknown 87.6
1889 Female, age 72, unknown 86.0
2409 Female, age 72, unknown 82.1
2699 Male, age 18, unknown 81.6
2583 Male, age 75, right hemisphere 78.7
2590 Female, age 75, unknown 71.7
1941 Male, age 53, unknown 70.8
2241 Male, age 72, unknown 69.0
1916 Female, age 42, unknown 67.1
2665 Male, age 74, both hemispheres 48.0
Superior colliculus
nTPM: 91.1
1995 Male, age 72, unknown 131.4
1913 Female, age 42, unknown 131.2
1895 Male, age 76, right hemisphere 103.0
2587 Male, age 74, left hemisphere 102.9
1839 Male, age 51, unknown 90.0
1796 Male, age 53, unknown 84.3
2668 Female, age 75, unknown 75.9
2087 Female, age 72, unknown 72.0
2261 Male, age 18, unknown 65.9
2664 Male, age 75, both hemispheres 54.5
Ventral tegmental area
nTPM: 95.1
2223 Female, age 72, unknown 130.6
2410 Female, age 72, unknown 106.4
2021 Male, age 53, unknown 85.6
2218 Male, age 76, both hemispheres 84.6
1942 Male, age 51, unknown 83.2
1915 Female, age 42, unknown 80.4

MIDBRAIN - GTEx RNA-seqi
Average nTPM 138.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 138.2
Samples: 139

Max nTPM: 509.0
Min nTPM: 34.6
Std nTPM: 80.9
Median nTPM: 108.3
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 509.0
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 421.3
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 366.4
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 351.5
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 336.6
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 333.2
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 327.6
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 319.3
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 316.4
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 315.6
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 315.0
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 908.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 908.0
FF:10158-103A5 76 years, female 908.0

MIDBRAIN - Mouse RNA-seqi
Average nTPM 10.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 10.1
Samples: 4

Max nTPM: 10.9
Min nTPM: 8.9
Sample A Male 10.9
Sample B Male 9.7
Sample C Female 8.9
Sample D Female 10.7

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 8.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 8.3
532642 Antisense, RP_040810_02_H07, Mouse strain C57BL/6J (56 days, male) 8.3

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