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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
PRIMARY MOUSE DATA
ANTIBODIES
AND
VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:128.5 nTPM
HPA:128.5 nTPM
GTEx:322.8 nTPM
FANTOM5:512.9 Scaled Tags Per Million

SPINAL CORD - HPA Brain RNA-seq
Max nTPM 128.5
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 107.1
1981 Female, age 72, midline 147.6
2816 Male, age 47, midline 110.3
2048 Male, age 55, midline 97.8
2194 Female, age 79, both hemispheres 95.9
2565 Male, age 75, midline 83.8
Cervical spinal cord, dorsal horn
nTPM: 128.5
2296 Male, age 66, both hemispheres 238.2
2173 Female, age 72, unknown 174.0
2069 Male, age 47, both hemispheres 120.4
1877 Male, age 55, unknown 93.9
2721 Male, age 90, both hemispheres 73.6
2297 Male, age 75, both hemispheres 71.0
Cervical spinal cord, ventral horn
nTPM: 103.0
2098 Female, age 72, unknown 151.0
2068 Male, age 55, unknown 116.5
2809 Male, age 90, both hemispheres 92.8
2295 Male, age 66, both hemispheres 87.3
2820 Female, age 79, both hemispheres 86.1
2480 Male, age 75, both hemispheres 84.5

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 322.8
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 322.8
Samples: 159

Max nTPM: 683.9
Min nTPM: 45.7
Std nTPM: 131.2
Median nTPM: 320.3
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 683.9
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 655.6
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 619.0
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 592.8
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 591.9
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 587.5
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 554.9
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 551.7
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 536.1
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 534.9
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 534.7
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 533.4
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 522.4
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 520.5
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 518.3
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 511.6
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 509.3
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 501.7
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 500.1
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 490.0
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 487.7
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 474.6
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 461.8
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 454.5
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 450.7
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 446.7
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 439.3
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 436.6
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 431.0
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 424.4
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 423.0
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 422.0
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 419.5
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 418.9
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 418.2
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 416.7
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 416.2
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 413.8
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 408.7
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 408.1
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 405.5
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 405.3
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 395.1
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 393.8
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 392.1
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 391.8
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 391.6
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 390.5
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 390.4
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 388.1
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 385.6
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 385.1
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 383.3
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 382.0
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 380.3
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 377.6
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 377.1
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 377.1
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 372.7
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 365.3
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 361.8
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 358.9
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 357.6
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 356.3
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 353.3
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 351.2
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 350.3
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 349.7
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 348.9
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 344.6
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 343.3
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 341.8
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 341.1
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 340.0
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 339.7
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 332.0
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 330.6
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 327.1
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 326.5
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 320.3
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 319.1
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 318.8
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 318.7
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 311.1
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 310.3
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 308.3
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 304.6
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 303.4
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 297.4
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 294.0
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 292.6
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 292.2
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 289.7
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 289.5
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 283.4
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 278.3
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 275.4
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 273.3
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 272.6
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 271.4
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 264.6
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 262.1
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 261.3
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 257.5
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 254.4
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 253.7
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 253.5
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 249.1
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 249.0
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 245.8
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 236.5
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 236.0
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 235.9
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 233.4
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 231.8
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 231.7
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 230.6
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 228.9
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 225.2
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 225.2
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 220.2
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 219.8
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 219.7
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 218.7
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 213.4
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 211.8
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 211.7
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 206.4
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 203.6
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 202.0
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 202.0
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 195.6
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 191.1
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 189.0
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 186.7
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 182.5
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 180.7
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 177.4
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 175.8
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 169.4
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 167.8
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 156.7
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 155.6
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 147.6
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 146.8
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 143.2
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 142.7
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 141.2
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 134.8
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 126.0
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 120.1
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 110.0
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 103.9
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 98.3
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 91.7
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 78.5
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 75.5
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 57.7
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 45.7
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 512.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 512.9
FF:10181-103D1 60 years, female 552.8
FF:10159-103A6 76 years, female 472.9

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